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view test-data/04/config.yml @ 6:2133b0be850a draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit 4e77eeda8a112fb50af00325a5164b986c16fc5c"
author galaxyp
date Wed, 06 May 2020 13:35:51 -0400
parents dcd39bcc7481
children d253b379322b
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            fastaFiles: [/home/galaxy/galaxy/database/files/000/dataset_4.dat]
            parseRules:
              identifierParseRule: '>([^\s]*)'
              descriptionParseRule: '>(.*)'
            minUniquePeptides: 0
            minPepLen: 7
            maxPeptideMass: 4600
            calcPeakProperties: False
            writeMzTab: False
            separateLfq: False
            lfqStabilizeLargeRatios: True
            lfqRequireMsms: True
            advancedSiteIntensities: True
            matchBetweenRuns: False
            includeContaminants: True
            quantMode: 1
            restrictProteinQuantification: True
            restrictMods: []
            useCounterparts: True
            paramGroups:
              - files: ['BSA_min_23.mzXML', 'BSA_min_22.mzxml']
                maxMissedCleavages: 2
                fixedModifications: [Carbamidomethyl (C)]
                variableModifications: [Oxidation (M)]
                enzymes: [Trypsin/P]
                enzymeMode: 0
                labelMods:
                  - [Arg6,Lys4]
                  - []
                  - [Arg10,DimethLys8]