Mercurial > repos > galaxyp > morpheus

annotate macros.xml @ 3:8295d959ca28 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
author galaxyp
date Mon, 15 Jul 2024 18:21:24 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
1 <macros>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
2 <token name="@TOOL_VERSION@">288</token>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
3 <token name="@VERSION_SUFFIX@">0</token>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
4 <token name="@PROFILE@">22.05</token>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
5 <xml name="edam_ontology">
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
6 <edam_topics>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
7 <edam_topic>topic_0121</edam_topic>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
8 </edam_topics>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
9 <edam_operations>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
10 <edam_operation>operation_2479</edam_operation>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
11 <edam_operation>operation_3092</edam_operation>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
12 </edam_operations>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
13 </xml>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
14 <xml name="biotools">
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
15 <xrefs>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
16 <xref type="bio.tools">morpheus</xref>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
17 </xrefs>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
18 </xml>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
19 <xml name="requirements">
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
20 <requirements>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
21 <requirement type="package" version="@TOOL_VERSION@">morpheus</requirement>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
22 </requirements>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
23 </xml>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
24 <xml name="modification_options">
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
25 <option value="acetylation of protein N-terminus">acetylation of protein N-terminus</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
26 <option value="acetylation of lysine">acetylation of lysine</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
27 <option value="phosphorylation of S">phosphorylation of S</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
28 <option value="phosphorylation of T">phosphorylation of T</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
29 <option value="phosphorylation of Y">phosphorylation of Y</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
30 <option value="deamidation of N">deamidation of N</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
31 <option value="deamidation of Q">deamidation of Q</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
32 <option value="pyro-cmC">pyro-cmC</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
33 <option value="pyro-E">pyro-E</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
34 <option value="pyro-Q">pyro-Q</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
35 <option value="TMT zero on peptide N-terminus">TMT zero on peptide N-terminus</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
36 <option value="TMT zero on K">TMT zero on K</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
37 <option value="TMT zero on Y">TMT zero on Y</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
38 <option value="TMT duplex on peptide N-terminus">TMT duplex on peptide N-terminus</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
39 <option value="TMT duplex on K">TMT duplex on K</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
40 <option value="TMT duplex on Y">TMT duplex on Y</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
41 <option value="TMT sixplex/tenplex on peptide N-terminus">TMT sixplex/tenplex on peptide N-terminus</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
42 <option value="TMT sixplex/tenplex on K">TMT sixplex/tenplex on K</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
43 <option value="TMT sixplex/tenplex on Y">TMT sixplex/tenplex on Y</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
44 <option value="iTRAQ 4-plex on peptide N-terminus">iTRAQ 4-plex on peptide N-terminus</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
45 <option value="iTRAQ 4-plex on K">iTRAQ 4-plex on K</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
46 <option value="iTRAQ 4-plex on Y">iTRAQ 4-plex on Y</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
47 <option value="iTRAQ 8-plex on peptide N-terminus">iTRAQ 8-plex on peptide N-terminus</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
48 <option value="iTRAQ 8-plex on K">iTRAQ 8-plex on K</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
49 <option value="iTRAQ 8-plex on Y ">iTRAQ 8-plex on Y </option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
50 </xml>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
51 <xml name="variable_modification_options">
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
52 <option value="oxidation of M" selected="true">oxidation of M</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
53 <option value="carbamidomethylation of C">carbamidomethylation of C</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
54 <expand macro="modification_options"/>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
55 </xml>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
56 <xml name="fixed_modification_options">
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
57 <option value="carbamidomethylation of C" selected="true">carbamidomethylation of C</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
58 <option value="oxidation of M">oxidation of M</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
59 <expand macro="modification_options"/>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
60 </xml>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
61 <xml name="proteases_options">
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
62 <option value="Arg-C">Arg-C</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
63 <option value="Asp-N" >Asp-N</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
64 <option value="chymotrypsin (no proline rule)" >chymotrypsin (no proline rule)</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
65 <option value="Glu-C" >Glu-C</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
66 <option value="Lys-C" >Lys-C</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
67 <option value="Lys-C (no proline rule)" >Lys-C (no proline rule)</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
68 <option value="Lys-N" >Lys-N</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
69 <option value="semi-trypsin" >semi-trypsin</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
70 <option value="semi-trypsin (no proline rule)" >semi-trypsin (no proline rule)</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
71 <option value="trypsin" >trypsin</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
72 <option value="trypsin (no proline rule)" selected="true">trypsin (no proline rule)</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
73 <option value="tryptophan oxidation" >tryptophan oxidation</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
74 <option value="non-specific" >non-specific</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
75 <option value="top-down" >top-down</option>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
76 </xml>
8295d959ca28 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
galaxyp
parents:
diff changeset
77 </macros>