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comparison macros.xml @ 3:8295d959ca28 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/morpheus commit 84a14a4f77dc68f80e6f7d9ac562b6d9b46d58b1
author galaxyp
date Mon, 15 Jul 2024 18:21:24 +0000
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2:e0104a9f20f0 3:8295d959ca28
1 <macros>
2 <token name="@TOOL_VERSION@">288</token>
3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PROFILE@">22.05</token>
5 <xml name="edam_ontology">
6 <edam_topics>
7 <edam_topic>topic_0121</edam_topic>
8 </edam_topics>
9 <edam_operations>
10 <edam_operation>operation_2479</edam_operation>
11 <edam_operation>operation_3092</edam_operation>
12 </edam_operations>
13 </xml>
14 <xml name="biotools">
15 <xrefs>
16 <xref type="bio.tools">morpheus</xref>
17 </xrefs>
18 </xml>
19 <xml name="requirements">
20 <requirements>
21 <requirement type="package" version="@TOOL_VERSION@">morpheus</requirement>
22 </requirements>
23 </xml>
24 <xml name="modification_options">
25 <option value="acetylation of protein N-terminus">acetylation of protein N-terminus</option>
26 <option value="acetylation of lysine">acetylation of lysine</option>
27 <option value="phosphorylation of S">phosphorylation of S</option>
28 <option value="phosphorylation of T">phosphorylation of T</option>
29 <option value="phosphorylation of Y">phosphorylation of Y</option>
30 <option value="deamidation of N">deamidation of N</option>
31 <option value="deamidation of Q">deamidation of Q</option>
32 <option value="pyro-cmC">pyro-cmC</option>
33 <option value="pyro-E">pyro-E</option>
34 <option value="pyro-Q">pyro-Q</option>
35 <option value="TMT zero on peptide N-terminus">TMT zero on peptide N-terminus</option>
36 <option value="TMT zero on K">TMT zero on K</option>
37 <option value="TMT zero on Y">TMT zero on Y</option>
38 <option value="TMT duplex on peptide N-terminus">TMT duplex on peptide N-terminus</option>
39 <option value="TMT duplex on K">TMT duplex on K</option>
40 <option value="TMT duplex on Y">TMT duplex on Y</option>
41 <option value="TMT sixplex/tenplex on peptide N-terminus">TMT sixplex/tenplex on peptide N-terminus</option>
42 <option value="TMT sixplex/tenplex on K">TMT sixplex/tenplex on K</option>
43 <option value="TMT sixplex/tenplex on Y">TMT sixplex/tenplex on Y</option>
44 <option value="iTRAQ 4-plex on peptide N-terminus">iTRAQ 4-plex on peptide N-terminus</option>
45 <option value="iTRAQ 4-plex on K">iTRAQ 4-plex on K</option>
46 <option value="iTRAQ 4-plex on Y">iTRAQ 4-plex on Y</option>
47 <option value="iTRAQ 8-plex on peptide N-terminus">iTRAQ 8-plex on peptide N-terminus</option>
48 <option value="iTRAQ 8-plex on K">iTRAQ 8-plex on K</option>
49 <option value="iTRAQ 8-plex on Y ">iTRAQ 8-plex on Y </option>
50 </xml>
51 <xml name="variable_modification_options">
52 <option value="oxidation of M" selected="true">oxidation of M</option>
53 <option value="carbamidomethylation of C">carbamidomethylation of C</option>
54 <expand macro="modification_options"/>
55 </xml>
56 <xml name="fixed_modification_options">
57 <option value="carbamidomethylation of C" selected="true">carbamidomethylation of C</option>
58 <option value="oxidation of M">oxidation of M</option>
59 <expand macro="modification_options"/>
60 </xml>
61 <xml name="proteases_options">
62 <option value="Arg-C">Arg-C</option>
63 <option value="Asp-N" >Asp-N</option>
64 <option value="chymotrypsin (no proline rule)" >chymotrypsin (no proline rule)</option>
65 <option value="Glu-C" >Glu-C</option>
66 <option value="Lys-C" >Lys-C</option>
67 <option value="Lys-C (no proline rule)" >Lys-C (no proline rule)</option>
68 <option value="Lys-N" >Lys-N</option>
69 <option value="semi-trypsin" >semi-trypsin</option>
70 <option value="semi-trypsin (no proline rule)" >semi-trypsin (no proline rule)</option>
71 <option value="trypsin" >trypsin</option>
72 <option value="trypsin (no proline rule)" selected="true">trypsin (no proline rule)</option>
73 <option value="tryptophan oxidation" >tryptophan oxidation</option>
74 <option value="non-specific" >non-specific</option>
75 <option value="top-down" >top-down</option>
76 </xml>
77 </macros>