annotate README_REPO.md @ 1:5fcf7b8a1e80 draft default tip

added repo dependencies
author galaxyp
date Thu, 20 Jun 2013 16:10:12 -0400
parents 59e5d8c53c81
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
1 # ms2preproc
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
2
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
3 This repository contains a tool wrapper for ms2preproc.
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
4
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
5 http://hci.iwr.uni-heidelberg.de/MIP/Software/ms2preproc.php
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
6
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
7 This tool requires Galaxy to be equipped with common proteomic
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
8 datatypes. These can be obtained by installing Ira Cooke's ProtK via
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
9 the tool shed or merging the changesets from the following repository
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
10 into your Galaxy instance:
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
11
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
12 https://bitbucket.org/galaxyp/galaxy-dist-proteomics
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
13
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
14 # Installing
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
15
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
16 This tool wrapper requires ms2preproc to be installed.
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
17
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
18 For Galaxy-P we are installing this tool via CloudBioLinux
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
19 (https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
20 this fabric script may not be exactly appropriate for your environment
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
21 it may serve as a template for how to install this software.
59e5d8c53c81 Uploaded
galaxyp
parents:
diff changeset
22