Mercurial > repos > galaxyp > ms2preproc
comparison README_REPO.md @ 0:59e5d8c53c81 draft
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| author | galaxyp |
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| date | Wed, 19 Dec 2012 00:27:24 -0500 |
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| -1:000000000000 | 0:59e5d8c53c81 |
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| 1 # ms2preproc | |
| 2 | |
| 3 This repository contains a tool wrapper for ms2preproc. | |
| 4 | |
| 5 http://hci.iwr.uni-heidelberg.de/MIP/Software/ms2preproc.php | |
| 6 | |
| 7 This tool requires Galaxy to be equipped with common proteomic | |
| 8 datatypes. These can be obtained by installing Ira Cooke's ProtK via | |
| 9 the tool shed or merging the changesets from the following repository | |
| 10 into your Galaxy instance: | |
| 11 | |
| 12 https://bitbucket.org/galaxyp/galaxy-dist-proteomics | |
| 13 | |
| 14 # Installing | |
| 15 | |
| 16 This tool wrapper requires ms2preproc to be installed. | |
| 17 | |
| 18 For Galaxy-P we are installing this tool via CloudBioLinux | |
| 19 (https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While | |
| 20 this fabric script may not be exactly appropriate for your environment | |
| 21 it may serve as a template for how to install this software. | |
| 22 |