Mercurial > repos > galaxyp > msconvert_nix

annotate test-data/small-deisotope.mzML @ 0:baa6c072fccc draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
author galaxyp
date Fri, 08 Apr 2016 16:08:09 -0400
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children 7016f1f10f42
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1 <?xml version="1.0" encoding="utf-8"?>
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2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
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3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0">
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4 <cvList count="2">
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5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.79.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
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6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
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7 </cvList>
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8 <fileDescription>
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9 <fileContent>
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10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
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11 <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
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12 </fileContent>
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13 <sourceFileList count="3">
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14 <sourceFile id="RAW1" name="small.RAW" location="file:///C:\pwiz-src\trunk\pwiz\example_data">
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15 <cvParam cvRef="MS" accession="MS:1000768" name="Thermo nativeID format" value=""/>
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16 <cvParam cvRef="MS" accession="MS:1000563" name="Thermo RAW format" value=""/>
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17 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="b43e9286b40e8b5dbc0dfa2e428495769ca96a96"/>
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18 </sourceFile>
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19 <sourceFile id="small.mzML" name="small.mzML" location="file:///">
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20 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/>
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21 </sourceFile>
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22 <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///">
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23 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="8af1e376b6ed33679f7fcf965a5e7fd6b1bf77b7"/>
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24 </sourceFile>
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25 </sourceFileList>
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26 </fileDescription>
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27 <referenceableParamGroupList count="1">
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28 <referenceableParamGroup id="CommonInstrumentParams">
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29 <cvParam cvRef="MS" accession="MS:1000448" name="LTQ FT" value=""/>
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30 <cvParam cvRef="MS" accession="MS:1000529" name="instrument serial number" value="SN06061F"/>
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31 </referenceableParamGroup>
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32 </referenceableParamGroupList>
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33 <softwareList count="3">
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34 <software id="Xcalibur" version="1.1 Beta 7">
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35 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/>
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36 </software>
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37 <software id="pwiz" version="3.0.8981">
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38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
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39 </software>
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40 <software id="pwiz_3.0.8990" version="3.0.8990">
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41 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
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42 </software>
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43 </softwareList>
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44 <instrumentConfigurationList count="2">
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45 <instrumentConfiguration id="IC1">
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46 <referenceableParamGroupRef ref="CommonInstrumentParams"/>
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47 <componentList count="3">
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48 <source order="1">
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49 <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/>
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50 <cvParam cvRef="MS" accession="MS:1000057" name="electrospray inlet" value=""/>
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51 </source>
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52 <analyzer order="2">
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53 <cvParam cvRef="MS" accession="MS:1000079" name="fourier transform ion cyclotron resonance mass spectrometer" value=""/>
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54 </analyzer>
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55 <detector order="3">
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56 <cvParam cvRef="MS" accession="MS:1000624" name="inductive detector" value=""/>
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57 </detector>
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58 </componentList>
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59 <softwareRef ref="Xcalibur"/>
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60 </instrumentConfiguration>
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61 <instrumentConfiguration id="IC2">
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62 <referenceableParamGroupRef ref="CommonInstrumentParams"/>
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63 <componentList count="3">
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64 <source order="1">
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65 <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/>
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66 <cvParam cvRef="MS" accession="MS:1000057" name="electrospray inlet" value=""/>
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67 </source>
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68 <analyzer order="2">
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69 <cvParam cvRef="MS" accession="MS:1000083" name="radial ejection linear ion trap" value=""/>
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70 </analyzer>
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71 <detector order="3">
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72 <cvParam cvRef="MS" accession="MS:1000253" name="electron multiplier" value=""/>
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73 </detector>
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74 </componentList>
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75 <softwareRef ref="Xcalibur"/>
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76 </instrumentConfiguration>
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77 </instrumentConfigurationList>
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galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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galaxyp
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diff changeset
552 </binaryDataArray>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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diff changeset
553 </binaryDataArrayList>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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554 </spectrum>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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562 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="8.484273125e05"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1676 </scanWindow>
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1677 </scanWindowList>
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1678 </scan>
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1679 </scanList>
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1680 <binaryDataArrayList count="2">
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1932 </binaryDataArray>
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1933 </binaryDataArrayList>
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1934 </spectrum>
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1936 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
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1937 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1"/>
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1941 <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="1.740913e06" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
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1942 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="1.6495375e07"/>
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1944 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="2000.009946620377" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1945 <scanList count="1">
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1946 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/>
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1947 <scan>
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1948 <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="0.358558333333" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
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1949 <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="FTMS + p ESI Full ms [200.00-2000.00]"/>
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1950 <cvParam cvRef="MS" accession="MS:1000616" name="preset scan configuration" value="1"/>
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1951 <cvParam cvRef="MS" accession="MS:1000927" name="ion injection time" value="66.962379455566" unitCvRef="UO" unitAccession="UO:0000028" unitName="millisecond"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1952 <scanWindowList count="1">
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diff changeset
1953 <scanWindow>
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1954 <cvParam cvRef="MS" accession="MS:1000501" name="scan window lower limit" value="200.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1955 <cvParam cvRef="MS" accession="MS:1000500" name="scan window upper limit" value="2000.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1956 </scanWindow>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1957 </scanWindowList>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1958 </scan>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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diff changeset
1959 </scanList>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1960 <binaryDataArrayList count="2">
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1961 <binaryDataArray encodedLength="2448">
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1962 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
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1963 <cvParam cvRef="MS" accession="MS:1002312" name="MS-Numpress linear prediction compression" value=""/>
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1964 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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diff changeset
1966 </binaryDataArray>
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1967 <binaryDataArray encodedLength="1612">
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1968 <cvParam cvRef="MS" accession="MS:1000519" name="32-bit integer" value=""/>
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1969 <cvParam cvRef="MS" accession="MS:1002313" name="MS-Numpress positive integer compression" value=""/>
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diff changeset
1970 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
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1971 <binary>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</binary>
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1972 </binaryDataArray>
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1973 </binaryDataArrayList>
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1974 </spectrum>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1975 <spectrum index="35" id="controllerType=0 controllerNumber=1 scan=36" defaultArrayLength="732" dataProcessingRef="pwiz_Reader_conversion">
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1976 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
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1977 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1"/>
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1978 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" value=""/>
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1979 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
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1980 <cvParam cvRef="MS" accession="MS:1000504" name="base peak m/z" value="810.545532226563" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1981 <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="1.057720703125e05" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
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parents:
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1982 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="6.5487065e06"/>
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1983 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="200.090909093618" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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1984 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="2000.00005364418" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1985 <scanList count="1">
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1986 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1987 <scan instrumentConfigurationRef="IC2">
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parents:
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1988 <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="0.361428333333" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1989 <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="ITMS + p ESI Full ms [200.00-2000.00]"/>
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parents:
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1990 <cvParam cvRef="MS" accession="MS:1000616" name="preset scan configuration" value="2"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1991 <cvParam cvRef="MS" accession="MS:1000927" name="ion injection time" value="1.416100502014" unitCvRef="UO" unitAccession="UO:0000028" unitName="millisecond"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1992 <scanWindowList count="1">
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1993 <scanWindow>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1994 <cvParam cvRef="MS" accession="MS:1000501" name="scan window lower limit" value="200.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1995 <cvParam cvRef="MS" accession="MS:1000500" name="scan window upper limit" value="2000.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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parents:
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1996 </scanWindow>
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1997 </scanWindowList>
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1998 </scan>
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1999 </scanList>
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parents:
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2000 <binaryDataArrayList count="2">
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2001 <binaryDataArray encodedLength="3496">
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2002 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
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parents:
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2003 <cvParam cvRef="MS" accession="MS:1002312" name="MS-Numpress linear prediction compression" value=""/>
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parents:
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2004 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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parents:
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2005 <binary>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</binary>
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2006 </binaryDataArray>
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2007 <binaryDataArray encodedLength="1980">
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2008 <cvParam cvRef="MS" accession="MS:1000519" name="32-bit integer" value=""/>
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parents:
diff changeset
2009 <cvParam cvRef="MS" accession="MS:1002313" name="MS-Numpress positive integer compression" value=""/>
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parents:
diff changeset
2010 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
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2012 </binaryDataArray>
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diff changeset
2013 </binaryDataArrayList>
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2014 </spectrum>
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diff changeset
2015 <spectrum index="36" id="controllerType=0 controllerNumber=1 scan=37" defaultArrayLength="325" dataProcessingRef="pwiz_Reader_conversion">
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2016 <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
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2017 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="2"/>
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2018 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" value=""/>
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2019 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
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2020 <cvParam cvRef="MS" accession="MS:1000504" name="base peak m/z" value="736.633056640625" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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2021 <cvParam cvRef="MS" accession="MS:1000505" name="base peak intensity" value="2.982659375e05" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
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2022 <cvParam cvRef="MS" accession="MS:1000285" name="total ion current" value="1.04157375e06"/>
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2023 <cvParam cvRef="MS" accession="MS:1000528" name="lowest observed m/z" value="228.148010253906" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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2024 <cvParam cvRef="MS" accession="MS:1000527" name="highest observed m/z" value="1503.574340820313" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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2025 <scanList count="1">
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2026 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" value=""/>
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2027 <scan instrumentConfigurationRef="IC2">
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2028 <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="0.364755" unitCvRef="UO" unitAccession="UO:0000031" unitName="minute"/>
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2029 <cvParam cvRef="MS" accession="MS:1000512" name="filter string" value="ITMS + c ESI d Full ms2 810.73@cid35.00 [210.00-1635.00]"/>
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2030 <cvParam cvRef="MS" accession="MS:1000616" name="preset scan configuration" value="3"/>
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2031 <cvParam cvRef="MS" accession="MS:1000927" name="ion injection time" value="11.512071609497" unitCvRef="UO" unitAccession="UO:0000028" unitName="millisecond"/>
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2032 <userParam name="[Thermo Trailer Extra]Monoisotopic M/Z:" value="0" type="xsd:float"/>
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2033 <scanWindowList count="1">
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2034 <scanWindow>
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2035 <cvParam cvRef="MS" accession="MS:1000501" name="scan window lower limit" value="210.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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2036 <cvParam cvRef="MS" accession="MS:1000500" name="scan window upper limit" value="1635.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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diff changeset
2037 </scanWindow>
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diff changeset
2038 </scanWindowList>
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diff changeset
2039 </scan>
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diff changeset
2040 </scanList>
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2041 <precursorList count="1">
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2042 <precursor spectrumRef="controllerType=0 controllerNumber=1 scan=36">
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diff changeset
2043 <isolationWindow>
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2044 <cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="810.73" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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2045 <cvParam cvRef="MS" accession="MS:1000828" name="isolation window lower offset" value="1.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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2046 <cvParam cvRef="MS" accession="MS:1000829" name="isolation window upper offset" value="1.0" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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diff changeset
2047 </isolationWindow>
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diff changeset
2048 <selectedIonList count="1">
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diff changeset
2049 <selectedIon>
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2050 <cvParam cvRef="MS" accession="MS:1000744" name="selected ion m/z" value="810.73" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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diff changeset
2051 <cvParam cvRef="MS" accession="MS:1000042" name="peak intensity" value="1.057720703125e05" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
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diff changeset
2052 </selectedIon>
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diff changeset
2053 </selectedIonList>
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2054 <activation>
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diff changeset
2055 <cvParam cvRef="MS" accession="MS:1000133" name="collision-induced dissociation" value=""/>
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2056 <cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="35.0" unitCvRef="UO" unitAccession="UO:0000266" unitName="electronvolt"/>
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diff changeset
2057 </activation>
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diff changeset
2058 </precursor>
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diff changeset
2059 </precursorList>
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diff changeset
2060 <binaryDataArrayList count="2">
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2061 <binaryDataArray encodedLength="1644">
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2062 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" value=""/>
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2063 <cvParam cvRef="MS" accession="MS:1002312" name="MS-Numpress linear prediction compression" value=""/>
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2064 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" value="" unitCvRef="MS" unitAccession="MS:1000040" unitName="m/z"/>
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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galaxyp
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galaxyp
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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baa6c072fccc planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit 4fa5bf9c62e4bba06c4d6e7de962c85959b61579-dirty
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galaxyp
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2767 </index>
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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galaxyp
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