Mercurial > repos > galaxyp > msconvert_nix

comparison test-data/small-peakpicking-cwt-allMS.mzML @ 1:7016f1f10f42 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d56659dd48f8c554a832787e71aca6ae65c90848
author galaxyp
date Tue, 14 Mar 2017 16:45:30 -0400
parents baa6c072fccc
children
comparison
equal deleted inserted replaced
0:baa6c072fccc 1:7016f1f10f42
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd"> 2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0"> 3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0">
4 <cvList count="2"> 4 <cvList count="2">
5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.79.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/> 5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.0.1" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/> 6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
7 </cvList> 7 </cvList>
8 <fileDescription> 8 <fileDescription>
9 <fileContent> 9 <fileContent>
10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/> 10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
32 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/> 32 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/>
33 </software> 33 </software>
34 <software id="pwiz" version="3.0.8981"> 34 <software id="pwiz" version="3.0.8981">
35 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> 35 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
36 </software> 36 </software>
37 <software id="pwiz_3.0.8990" version="3.0.8990"> 37 <software id="pwiz_3.0.9987" version="3.0.9987">
38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/> 38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
39 </software> 39 </software>
40 </softwareList> 40 </softwareList>
41 <instrumentConfigurationList count="2"> 41 <instrumentConfigurationList count="2">
42 <instrumentConfiguration id="IC1"> 42 <instrumentConfiguration id="IC1">
77 <processingMethod order="0" softwareRef="pwiz"> 77 <processingMethod order="0" softwareRef="pwiz">
78 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> 78 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
79 </processingMethod> 79 </processingMethod>
80 </dataProcessing> 80 </dataProcessing>
81 <dataProcessing id="pwiz_Reader_conversion"> 81 <dataProcessing id="pwiz_Reader_conversion">
82 <processingMethod order="0" softwareRef="pwiz_3.0.8990"> 82 <processingMethod order="0" softwareRef="pwiz_3.0.9987">
83 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/> 83 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
84 </processingMethod> 84 </processingMethod>
85 <processingMethod order="1" softwareRef="pwiz_3.0.8990"> 85 <processingMethod order="1" softwareRef="pwiz_3.0.9987">
86 <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/> 86 <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/>
87 </processingMethod> 87 </processingMethod>
88 </dataProcessing> 88 </dataProcessing>
89 </dataProcessingList> 89 </dataProcessingList>
90 <run id="small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2005-07-20T14:44:22Z" defaultSourceFileRef="RAW1"> 90 <run id="small" defaultInstrumentConfigurationRef="IC1" startTimeStamp="2005-07-20T14:44:22Z" defaultSourceFileRef="RAW1">
1267 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/> 1267 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" value="" unitCvRef="MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
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