Mercurial > repos > galaxyp > msconvert_nix

diff test-data/small-index-filter.mzML @ 1:7016f1f10f42 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d56659dd48f8c554a832787e71aca6ae65c90848
author galaxyp
date Tue, 14 Mar 2017 16:45:30 -0400
parents baa6c072fccc
children
line wrap: on
line diff
--- a/test-data/small-index-filter.mzML	Fri Apr 08 16:08:09 2016 -0400
+++ b/test-data/small-index-filter.mzML	Tue Mar 14 16:45:30 2017 -0400
@@ -2,7 +2,7 @@
 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
   <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0">
     <cvList count="2">
-      <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.79.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
+      <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.0.1" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
       <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
     </cvList>
     <fileDescription>
@@ -20,7 +20,7 @@
           <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/>
         </sourceFile>
         <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///">
-          <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="8af1e376b6ed33679f7fcf965a5e7fd6b1bf77b7"/>
+          <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="2d5cdd239d18de37386cf9409e30693767b16f82"/>
         </sourceFile>
       </sourceFileList>
     </fileDescription>
@@ -37,7 +37,7 @@
       <software id="pwiz" version="3.0.8981">
         <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
       </software>
-      <software id="pwiz_3.0.8990" version="3.0.8990">
+      <software id="pwiz_3.0.9987" version="3.0.9987">
         <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
       </software>
     </softwareList>
@@ -82,10 +82,10 @@
         </processingMethod>
       </dataProcessing>
       <dataProcessing id="pwiz_Reader_conversion">
-        <processingMethod order="0" softwareRef="pwiz_3.0.8990">
+        <processingMethod order="0" softwareRef="pwiz_3.0.9987">
           <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
         </processingMethod>
-        <processingMethod order="1" softwareRef="pwiz_3.0.8990">
+        <processingMethod order="1" softwareRef="pwiz_3.0.9987">
           <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/>
         </processingMethod>
       </dataProcessing>
@@ -496,18 +496,18 @@
   </mzML>
   <indexList count="2">
     <index name="spectrum">
-      <offset idRef="controllerType=0 controllerNumber=1 scan=3">5577</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=4">14148</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=5">26006</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=11">36522</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=14">47993</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=15">57476</offset>
-      <offset idRef="controllerType=0 controllerNumber=1 scan=16">65257</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=3">5576</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=4">14147</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=5">26005</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=11">36521</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=14">47992</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=15">57475</offset>
+      <offset idRef="controllerType=0 controllerNumber=1 scan=16">65256</offset>
     </index>
     <index name="chromatogram">
-      <offset idRef="TIC">76395</offset>
+      <offset idRef="TIC">76394</offset>
     </index>
   </indexList>
-  <indexListOffset>78345</indexListOffset>
-  <fileChecksum>0d5bbd9cad4ad9471eba2e80d0ddea2cddcf3db9</fileChecksum>
+  <indexListOffset>78344</indexListOffset>
+  <fileChecksum>ee644abff7e27a2bdc852562fcd0258f31fb46eb</fileChecksum>
 </indexedmzML>