Mercurial > repos > galaxyp > msconvert_nix

annotate test-data/small-index-filter.mzML @ 1:7016f1f10f42 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msconvert commit d56659dd48f8c554a832787e71aca6ae65c90848
author galaxyp
date Tue, 14 Mar 2017 16:45:30 -0400
parents baa6c072fccc
children
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1 <?xml version="1.0" encoding="utf-8"?>
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2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
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3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="small" version="1.1.0">
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4 <cvList count="2">
1
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5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="4.0.1" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
0
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6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
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7 </cvList>
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8 <fileDescription>
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9 <fileContent>
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10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
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11 <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
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12 </fileContent>
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13 <sourceFileList count="3">
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14 <sourceFile id="RAW1" name="small.RAW" location="file:///C:\pwiz-src\trunk\pwiz\example_data">
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15 <cvParam cvRef="MS" accession="MS:1000768" name="Thermo nativeID format" value=""/>
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16 <cvParam cvRef="MS" accession="MS:1000563" name="Thermo RAW format" value=""/>
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17 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="b43e9286b40e8b5dbc0dfa2e428495769ca96a96"/>
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18 </sourceFile>
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19 <sourceFile id="small.mzML" name="small.mzML" location="file:///">
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20 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="4efa13a2795731b5f2a1ff1c463daf0d24b9a9d9"/>
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21 </sourceFile>
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22 <sourceFile id="small-peakpicking-cwt-allMS.mzML" name="small-peakpicking-cwt-allMS.mzML" location="file:///">
1
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23 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="2d5cdd239d18de37386cf9409e30693767b16f82"/>
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24 </sourceFile>
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25 </sourceFileList>
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26 </fileDescription>
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27 <referenceableParamGroupList count="1">
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28 <referenceableParamGroup id="CommonInstrumentParams">
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29 <cvParam cvRef="MS" accession="MS:1000448" name="LTQ FT" value=""/>
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30 <cvParam cvRef="MS" accession="MS:1000529" name="instrument serial number" value="SN06061F"/>
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31 </referenceableParamGroup>
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32 </referenceableParamGroupList>
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33 <softwareList count="3">
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34 <software id="Xcalibur" version="1.1 Beta 7">
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35 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/>
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36 </software>
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37 <software id="pwiz" version="3.0.8981">
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38 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
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39 </software>
1
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40 <software id="pwiz_3.0.9987" version="3.0.9987">
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41 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
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42 </software>
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43 </softwareList>
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44 <instrumentConfigurationList count="2">
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45 <instrumentConfiguration id="IC1">
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46 <referenceableParamGroupRef ref="CommonInstrumentParams"/>
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47 <componentList count="3">
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48 <source order="1">
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49 <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/>
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50 <cvParam cvRef="MS" accession="MS:1000057" name="electrospray inlet" value=""/>
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51 </source>
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52 <analyzer order="2">
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53 <cvParam cvRef="MS" accession="MS:1000079" name="fourier transform ion cyclotron resonance mass spectrometer" value=""/>
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54 </analyzer>
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55 <detector order="3">
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56 <cvParam cvRef="MS" accession="MS:1000624" name="inductive detector" value=""/>
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57 </detector>
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58 </componentList>
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59 <softwareRef ref="Xcalibur"/>
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60 </instrumentConfiguration>
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61 <instrumentConfiguration id="IC2">
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62 <referenceableParamGroupRef ref="CommonInstrumentParams"/>
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63 <componentList count="3">
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64 <source order="1">
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65 <cvParam cvRef="MS" accession="MS:1000073" name="electrospray ionization" value=""/>
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66 <cvParam cvRef="MS" accession="MS:1000057" name="electrospray inlet" value=""/>
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67 </source>
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68 <analyzer order="2">
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69 <cvParam cvRef="MS" accession="MS:1000083" name="radial ejection linear ion trap" value=""/>
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70 </analyzer>
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71 <detector order="3">
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72 <cvParam cvRef="MS" accession="MS:1000253" name="electron multiplier" value=""/>
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73 </detector>
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74 </componentList>
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75 <softwareRef ref="Xcalibur"/>
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76 </instrumentConfiguration>
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77 </instrumentConfigurationList>
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