Mercurial > repos > galaxyp > openms

comparison high_res_precursosr_mass_corrector.xml @ 0:ba86fd127f5a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author galaxyp
date Wed, 19 Dec 2012 00:32:25 -0500
parents
children cf0d72c7b482
comparison
equal deleted inserted replaced
-1:000000000000 0:ba86fd127f5a
1 <tool id="openms_high_res_precursor_mass_corrector" version="0.1" name="Precursor Mass Corrector (Hi Res)">
2 <description>
3 precursor m/z correction on picked (centroided) high resolution data.
4 </description>
5 <requirements>
6 <requirement type="package">openms</requirement>
7 </requirements>
8 <configfiles>
9 <configfile name="config">[simple_options]
10 in=${input}
11 out=${out}
12 </configfile>
13 </configfiles>
14 <command interpreter="python">
15 openms_wrapper.py -executable 'HighResPrecursorMassCorrector' -config $config
16 </command>
17 <inputs>
18 <param format="mzML" name="input" type="data" label="Input picked peak list"/>
19 </inputs>
20 <outputs>
21 <data format="mzML" name="output" />
22 </outputs>
23 <help>
24 **What it does**
25
26 This tool performs precursor mz correction on picked (=centroided) high resolution data.
27
28 **Citation**
29
30 For the underlying tool, please cite ``Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, and Oliver Kohlbacher, 2008. OpenMS – an Open-Source Software Framework for Mass Spectrometry. BMC Bioinformatics 9: 163. doi:10.1186/1471-2105-9-163.``
31
32 If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-openms
33 </help>
34 </tool>