Mercurial > repos > galaxyp > openms_digestor

comparison Digestor.xml @ 7:4a795d35e396 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
author galaxyp
date Mon, 12 Feb 2018 13:12:11 -0500
parents 3e8b14ad38c2
children 688f329e6583
comparison
equal deleted inserted replaced
6:94dce068fb3e 7:4a795d35e396
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="Digestor" name="Digestor" version="2.2.0"> 4 <tool id="Digestor" name="Digestor" version="2.3.0">
5 <description>Digests a protein database in-silico.</description> 5 <description>Digests a protein database in-silico.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">Digestor</token> 7 <token name="@EXECUTABLE@">Digestor</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
57 </param> 57 </param>
58 <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="The number of allowed missed cleavages" help="(-missed_cleavages) "/> 58 <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="The number of allowed missed cleavages" help="(-missed_cleavages) "/>
59 <param name="param_min_length" type="integer" value="6" label="Minimum length of peptide" help="(-min_length) "/> 59 <param name="param_min_length" type="integer" value="6" label="Minimum length of peptide" help="(-min_length) "/>
60 <param name="param_max_length" type="integer" value="40" label="Maximum length of peptide" help="(-max_length) "/> 60 <param name="param_max_length" type="integer" value="40" label="Maximum length of peptide" help="(-max_length) "/>
61 <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The type of digestion enzyme" help="(-enzyme) "> 61 <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The type of digestion enzyme" help="(-enzyme) ">
62 <option value="proline endopeptidase">proline endopeptidase</option>
63 <option value="V8-DE">V8-DE</option>
64 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
65 <option value="no cleavage">no cleavage</option>
66 <option value="2-iodobenzoate">2-iodobenzoate</option>
67 <option value="leukocyte elastase">leukocyte elastase</option>
62 <option value="V8-E">V8-E</option> 68 <option value="V8-E">V8-E</option>
69 <option value="unspecific cleavage">unspecific cleavage</option>
70 <option value="Arg-C">Arg-C</option>
71 <option value="CNBr">CNBr</option>
72 <option value="Alpha-lytic protease">Alpha-lytic protease</option>
73 <option value="Chymotrypsin">Chymotrypsin</option>
74 <option value="Chymotrypsin/P">Chymotrypsin/P</option>
75 <option value="TrypChymo">TrypChymo</option>
76 <option value="Asp-N_ambic">Asp-N_ambic</option>
77 <option value="Lys-C">Lys-C</option>
78 <option value="Trypsin" selected="true">Trypsin</option>
63 <option value="Trypsin/P">Trypsin/P</option> 79 <option value="Trypsin/P">Trypsin/P</option>
80 <option value="Asp-N">Asp-N</option>
81 <option value="Lys-N">Lys-N</option>
82 <option value="Formic_acid">Formic_acid</option>
83 <option value="Lys-C/P">Lys-C/P</option>
84 <option value="Asp-N/B">Asp-N/B</option>
64 <option value="PepsinA">PepsinA</option> 85 <option value="PepsinA">PepsinA</option>
65 <option value="CNBr">CNBr</option> 86 <option value="Arg-C/P">Arg-C/P</option>
66 <option value="Lys-C/P">Lys-C/P</option>
67 <option value="Asp-N_ambic">Asp-N_ambic</option>
68 <option value="Arg-C">Arg-C</option>
69 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
70 <option value="2-iodobenzoate">2-iodobenzoate</option>
71 <option value="Trypsin" selected="true">Trypsin</option>
72 <option value="TrypChymo">TrypChymo</option>
73 <option value="Chymotrypsin">Chymotrypsin</option>
74 <option value="Asp-N">Asp-N</option>
75 <option value="Formic_acid">Formic_acid</option>
76 <option value="V8-DE">V8-DE</option>
77 <option value="Lys-C">Lys-C</option>
78 <option value="no cleavage">no cleavage</option>
79 <option value="leukocyte elastase">leukocyte elastase</option>
80 <option value="proline endopeptidase">proline endopeptidase</option>
81 <option value="unspecific cleavage">unspecific cleavage</option>
82 </param> 87 </param>
83 <expand macro="advanced_options"> 88 <expand macro="advanced_options">
84 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> 89 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
85 </expand> 90 </expand>
86 </inputs> 91 </inputs>