Mercurial > repos > galaxyp > openms_digestor

diff Digestor.xml @ 7:4a795d35e396 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
author galaxyp
date Mon, 12 Feb 2018 13:12:11 -0500
parents 3e8b14ad38c2
children 688f329e6583
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line diff
--- a/Digestor.xml	Thu Jan 11 17:54:22 2018 -0500
+++ b/Digestor.xml	Mon Feb 12 13:12:11 2018 -0500
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Utilities]-->
-<tool id="Digestor" name="Digestor" version="2.2.0">
+<tool id="Digestor" name="Digestor" version="2.3.0">
   <description>Digests a protein database in-silico.</description>
   <macros>
     <token name="@EXECUTABLE@">Digestor</token>
@@ -59,26 +59,31 @@
     <param name="param_min_length" type="integer" value="6" label="Minimum length of peptide" help="(-min_length) "/>
     <param name="param_max_length" type="integer" value="40" label="Maximum length of peptide" help="(-max_length) "/>
     <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The type of digestion enzyme" help="(-enzyme) ">
+      <option value="proline endopeptidase">proline endopeptidase</option>
+      <option value="V8-DE">V8-DE</option>
+      <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
+      <option value="no cleavage">no cleavage</option>
+      <option value="2-iodobenzoate">2-iodobenzoate</option>
+      <option value="leukocyte elastase">leukocyte elastase</option>
       <option value="V8-E">V8-E</option>
-      <option value="Trypsin/P">Trypsin/P</option>
-      <option value="PepsinA">PepsinA</option>
+      <option value="unspecific cleavage">unspecific cleavage</option>
+      <option value="Arg-C">Arg-C</option>
       <option value="CNBr">CNBr</option>
-      <option value="Lys-C/P">Lys-C/P</option>
+      <option value="Alpha-lytic protease">Alpha-lytic protease</option>
+      <option value="Chymotrypsin">Chymotrypsin</option>
+      <option value="Chymotrypsin/P">Chymotrypsin/P</option>
+      <option value="TrypChymo">TrypChymo</option>
       <option value="Asp-N_ambic">Asp-N_ambic</option>
-      <option value="Arg-C">Arg-C</option>
-      <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
-      <option value="2-iodobenzoate">2-iodobenzoate</option>
+      <option value="Lys-C">Lys-C</option>
       <option value="Trypsin" selected="true">Trypsin</option>
-      <option value="TrypChymo">TrypChymo</option>
-      <option value="Chymotrypsin">Chymotrypsin</option>
+      <option value="Trypsin/P">Trypsin/P</option>
       <option value="Asp-N">Asp-N</option>
+      <option value="Lys-N">Lys-N</option>
       <option value="Formic_acid">Formic_acid</option>
-      <option value="V8-DE">V8-DE</option>
-      <option value="Lys-C">Lys-C</option>
-      <option value="no cleavage">no cleavage</option>
-      <option value="leukocyte elastase">leukocyte elastase</option>
-      <option value="proline endopeptidase">proline endopeptidase</option>
-      <option value="unspecific cleavage">unspecific cleavage</option>
+      <option value="Lys-C/P">Lys-C/P</option>
+      <option value="Asp-N/B">Asp-N/B</option>
+      <option value="PepsinA">PepsinA</option>
+      <option value="Arg-C/P">Arg-C/P</option>
     </param>
     <expand macro="advanced_options">
       <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>