Mercurial > repos > galaxyp > openms_falsediscoveryrate
comparison FalseDiscoveryRate.xml @ 9:7cc2a2687bff draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Wed, 15 May 2019 08:27:52 -0400 |
parents | f13beb0ac55d |
children | 100359fb8e7c |
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8:bbfd2b112a30 | 9:7cc2a2687bff |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>FalseDiscoveryRate | 13 <command detect_errors="aggressive"><![CDATA[FalseDiscoveryRate |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
58 #if $adv_opts.adv_opts_selector=='advanced': | 58 #if $adv_opts.adv_opts_selector=='advanced': |
59 #if $adv_opts.param_force: | 59 #if $adv_opts.param_force: |
60 -force | 60 -force |
61 #end if | 61 #end if |
62 #end if | 62 #end if |
63 </command> | 63 ]]></command> |
64 <inputs> | 64 <inputs> |
65 <param name="param_in" type="data" format="idxml" optional="False" label="Identifications from searching a target-decoy database" help="(-in) "/> | 65 <param name="param_in" type="data" format="idxml" optional="False" label="Identifications from searching a target-decoy database" help="(-in) "/> |
66 <param name="param_PSM" display="radio" type="select" optional="False" value="true" label="Perform FDR calculation on PSM level" help="(-PSM) "> | 66 <param name="param_PSM" display="radio" type="select" optional="False" value="true" label="Perform FDR calculation on PSM level" help="(-PSM) "> |
67 <option value="true" selected="true">true</option> | 67 <option value="true" selected="true">true</option> |
68 <option value="false">false</option> | 68 <option value="false">false</option> |
86 <data name="param_out" format="idxml"/> | 86 <data name="param_out" format="idxml"/> |
87 </outputs> | 87 </outputs> |
88 <help>Estimates the false discovery rate on peptide and protein level using decoy searches. | 88 <help>Estimates the false discovery rate on peptide and protein level using decoy searches. |
89 | 89 |
90 | 90 |
91 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FalseDiscoveryRate.html</help> | 91 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FalseDiscoveryRate.html</help> |
92 </tool> | 92 </tool> |