Mercurial > repos > galaxyp > openms_falsediscoveryrate

comparison FalseDiscoveryRate.xml @ 9:7cc2a2687bff draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:27:52 -0400
parents f13beb0ac55d
children 100359fb8e7c
comparison
equal deleted inserted replaced
8:bbfd2b112a30 9:7cc2a2687bff
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>FalseDiscoveryRate 13 <command detect_errors="aggressive"><![CDATA[FalseDiscoveryRate
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
58 #if $adv_opts.adv_opts_selector=='advanced': 58 #if $adv_opts.adv_opts_selector=='advanced':
59 #if $adv_opts.param_force: 59 #if $adv_opts.param_force:
60 -force 60 -force
61 #end if 61 #end if
62 #end if 62 #end if
63 </command> 63 ]]></command>
64 <inputs> 64 <inputs>
65 <param name="param_in" type="data" format="idxml" optional="False" label="Identifications from searching a target-decoy database" help="(-in) "/> 65 <param name="param_in" type="data" format="idxml" optional="False" label="Identifications from searching a target-decoy database" help="(-in) "/>
66 <param name="param_PSM" display="radio" type="select" optional="False" value="true" label="Perform FDR calculation on PSM level" help="(-PSM) "> 66 <param name="param_PSM" display="radio" type="select" optional="False" value="true" label="Perform FDR calculation on PSM level" help="(-PSM) ">
67 <option value="true" selected="true">true</option> 67 <option value="true" selected="true">true</option>
68 <option value="false">false</option> 68 <option value="false">false</option>
86 <data name="param_out" format="idxml"/> 86 <data name="param_out" format="idxml"/>
87 </outputs> 87 </outputs>
88 <help>Estimates the false discovery rate on peptide and protein level using decoy searches. 88 <help>Estimates the false discovery rate on peptide and protein level using decoy searches.
89 89
90 90
91 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FalseDiscoveryRate.html</help> 91 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FalseDiscoveryRate.html</help>
92 </tool> 92 </tool>