Mercurial > repos > galaxyp > openms_featurefindermultiplex

comparison FeatureFinderMultiplex.xml @ 14:5e5771b511a3 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:29:10 +0000
parents 3098bea02bd8
children 9876bda3ec53
comparison
equal deleted inserted replaced
13:18f63fd679e3 14:5e5771b511a3
124 <param name="ICPL4" argument="-labels:ICPL4" type="float" optional="true" min="0.0" value="109.046571" label="ICPL:2H(4) | H(-1) 2H(4) C(6) N O | unimod #687" help=""/> 124 <param name="ICPL4" argument="-labels:ICPL4" type="float" optional="true" min="0.0" value="109.046571" label="ICPL:2H(4) | H(-1) 2H(4) C(6) N O | unimod #687" help=""/>
125 <param name="ICPL6" argument="-labels:ICPL6" type="float" optional="true" min="0.0" value="111.041593" label="ICPL:13C(6) | H(3) 13C(6) N O | unimod #364" help=""/> 125 <param name="ICPL6" argument="-labels:ICPL6" type="float" optional="true" min="0.0" value="111.041593" label="ICPL:13C(6) | H(3) 13C(6) N O | unimod #364" help=""/>
126 <param name="ICPL10" argument="-labels:ICPL10" type="float" optional="true" min="0.0" value="115.0667" label="ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866" help=""/> 126 <param name="ICPL10" argument="-labels:ICPL10" type="float" optional="true" min="0.0" value="115.0667" label="ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866" help=""/>
127 </section> 127 </section>
128 <expand macro="adv_opts_macro"> 128 <expand macro="adv_opts_macro">
129 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 129 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
130 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 130 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
131 <expand macro="list_string_san"/> 131 <expand macro="list_string_san"/>
132 </param> 132 </param>
133 </expand> 133 </expand>
134 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false"> 134 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
135 <option value="out_FLAG">out (ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866)</option> 135 <option value="out_FLAG">out (Output file containing the individual peptide features)</option>
136 <option value="out_multiplets_FLAG">out_multiplets (ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866)</option> 136 <option value="out_multiplets_FLAG">out_multiplets (Optional output file containing all detected peptide groups)</option>
137 <option value="out_blacklist_FLAG">out_blacklist (ICPL:13C(6)2H(4) | H(-1) 2H(4) 13C(6) N O | unimod #866)</option> 137 <option value="out_blacklist_FLAG">out_blacklist (Optional output file containing all peaks which have been associated with a peptide feature (and subsequently blacklisted))</option>
138 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 138 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
139 </param> 139 </param>
140 </inputs> 140 </inputs>
141 <outputs> 141 <outputs>
142 <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml"> 142 <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml">
160 <expand macro="manutest_FeatureFinderMultiplex"/> 160 <expand macro="manutest_FeatureFinderMultiplex"/>
161 </tests> 161 </tests>
162 <help><![CDATA[Determination of peak ratios in LC-MS data 162 <help><![CDATA[Determination of peak ratios in LC-MS data
163 163
164 164
165 For more information, visit http://www.openms.de/documentation/TOPP_FeatureFinderMultiplex.html]]></help> 165 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_FeatureFinderMultiplex.html]]></help>
166 <expand macro="references"/> 166 <expand macro="references"/>
167 </tool> 167 </tool>