Mercurial > repos > galaxyp > openms_featurefindermultiplex

diff FeatureFinderMultiplex.xml @ 14:5e5771b511a3 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:29:10 +0000
parents 3098bea02bd8
children 9876bda3ec53
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--- a/FeatureFinderMultiplex.xml	Thu Sep 24 12:09:25 2020 +0000
+++ b/FeatureFinderMultiplex.xml	Tue Oct 13 20:29:10 2020 +0000
@@ -126,15 +126,15 @@
       <param name="ICPL10" argument="-labels:ICPL10" type="float" optional="true" min="0.0" value="115.0667" label="ICPL:13C(6)2H(4)  |  H(-1) 2H(4) 13C(6) N O  |  unimod #866" help=""/>
     </section>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false">
-      <option value="out_FLAG">out (ICPL:13C(6)2H(4)  |  H(-1) 2H(4) 13C(6) N O  |  unimod #866)</option>
-      <option value="out_multiplets_FLAG">out_multiplets (ICPL:13C(6)2H(4)  |  H(-1) 2H(4) 13C(6) N O  |  unimod #866)</option>
-      <option value="out_blacklist_FLAG">out_blacklist (ICPL:13C(6)2H(4)  |  H(-1) 2H(4) 13C(6) N O  |  unimod #866)</option>
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
+      <option value="out_FLAG">out (Output file containing the individual peptide features)</option>
+      <option value="out_multiplets_FLAG">out_multiplets (Optional output file containing all detected peptide groups)</option>
+      <option value="out_blacklist_FLAG">out_blacklist (Optional output file containing all peaks which have been associated with a peptide feature (and subsequently blacklisted))</option>
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -162,6 +162,6 @@
   <help><![CDATA[Determination of peak ratios in LC-MS data
 
 
-For more information, visit http://www.openms.de/documentation/TOPP_FeatureFinderMultiplex.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_FeatureFinderMultiplex.html]]></help>
   <expand macro="references"/>
 </tool>