Mercurial > repos > galaxyp > openms_fileconverter

comparison FileConverter.xml @ 9:1a186cc82c8d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:46:09 -0400
parents 1fe84d73c19c
children f2388622d581
comparison
equal deleted inserted replaced
8:efd9d9e7fd2c 9:1a186cc82c8d
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>FileConverter 13 <command detect_errors="aggressive"><![CDATA[FileConverter
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
66 #end if 66 #end if
67 #if $adv_opts.param_force: 67 #if $adv_opts.param_force:
68 -force 68 -force
69 #end if 69 #end if
70 #end if 70 #end if
71 </command> 71 ]]></command>
72 <inputs> 72 <inputs>
73 <param name="param_in" type="data" format="mzData,mzxml,mzml,cachedMzML,dta,dta2d,mgf,featurexml,consensusxml,ms2,fid,tabular,peplist,kroenik,tabular" optional="False" label="Input file to convert" help="(-in) "/> 73 <param name="param_in" type="data" format="mzData,mzxml,mzml,cachedMzML,dta,dta2d,mgf,featurexml,consensusxml,ms2,fid,tabular,peplist,kroenik,tabular" optional="False" label="Input file to convert" help="(-in) "/>
74 <expand macro="advanced_options"> 74 <expand macro="advanced_options">
75 <param name="param_UID_postprocessing" display="radio" type="select" optional="False" value="ensure" label="unique ID post-processing for output data" help="(-UID_postprocessing) &lt;br&gt;'none' keeps current IDs even if invalid. &lt;br&gt;'ensure' keeps current IDs but reassigns invalid ones. &lt;br&gt;'reassign' assigns new unique IDs"> 75 <param name="param_UID_postprocessing" display="radio" type="select" optional="False" value="ensure" label="unique ID post-processing for output data" help="(-UID_postprocessing) &lt;br&gt;'none' keeps current IDs even if invalid. &lt;br&gt;'ensure' keeps current IDs but reassigns invalid ones. &lt;br&gt;'reassign' assigns new unique IDs">
76 <option value="none">none</option> 76 <option value="none">none</option>
107 <data name="param_out" metadata_source="param_in" auto_format="true"/> 107 <data name="param_out" metadata_source="param_in" auto_format="true"/>
108 </outputs> 108 </outputs>
109 <help>Converts between different MS file formats. 109 <help>Converts between different MS file formats.
110 110
111 111
112 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileConverter.html</help> 112 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FileConverter.html</help>
113 </tool> 113 </tool>