diff FileMerger.xml @ 13:8b871a67ba56 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:42:20 +0000
parents 1dfc532aadd1
children b2fc8da99bcc
line wrap: on
line diff
--- a/FileMerger.xml	Thu Sep 24 12:11:25 2020 +0000
+++ b/FileMerger.xml	Tue Oct 13 19:42:20 2020 +0000
@@ -80,13 +80,13 @@
       <param name="ms_level" argument="-raw:ms_level" type="integer" optional="true" value="0" label="If 1 or higher, this number is assigned to spectra as the MS level" help="This option is useful for DTA files which do not contain MS level information"/>
     </section>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
-      <option value="trafo_out_FLAG">trafo_out (If 1 or higher, this number is assigned to spectra as the MS level)</option>
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
+      <option value="trafo_out_FLAG">trafo_out (Output of retention time transformations that were applied to the input files to produce non-overlapping RT ranges)</option>
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -115,6 +115,6 @@
   <help><![CDATA[Merges several MS files into one file.
 
 
-For more information, visit http://www.openms.de/documentation/TOPP_FileMerger.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_FileMerger.html]]></help>
   <expand macro="references"/>
 </tool>