Mercurial > repos > galaxyp > openms_idripper
diff IDRipper.xml @ 0:9af6146f168b draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author | galaxyp |
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date | Wed, 01 Mar 2017 12:17:09 -0500 |
parents | |
children | a7baf45f8ba5 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/IDRipper.xml Wed Mar 01 12:17:09 2017 -0500 @@ -0,0 +1,51 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--Proposed Tool Section: [File Handling]--> +<tool id="IDRipper" name="IDRipper" version="2.1.0"> + <description>Split protein/peptide identification file into several files according to annotated file origin.</description> + <macros> + <token name="@EXECUTABLE@">IDRipper</token> + <import>macros.xml</import> + </macros> + <expand macro="references"/> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>IDRipper + +#if $param_in: + -in $param_in +#end if +#if $param_out: + -out $param_out +#end if +#if $param_out_path: + -out_path "$param_out_path" +#end if +#if $adv_opts.adv_opts_selector=='advanced': + #if $adv_opts.param_force: + -force +#end if +#end if +</command> + <inputs> + <param name="param_in" type="data" format="idxml" optional="False" label="Input file, in which the protein/peptide identifications must be tagged with 'file_origin'" help="(-in) "/> + <param name="param_out_path" type="text" size="30" label="Directory for the output files after ripping according to 'file_origin'" help="(-out_path) If 'out_path' is set, 'out' is ignored"> + <sanitizer> + <valid initial="string.printable"> + <remove value="'"/> + <remove value="""/> + </valid> + </sanitizer> + </param> + <expand macro="advanced_options"> + <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> + </expand> + </inputs> + <outputs> + <data name="param_out" format="idxml"/> + </outputs> + <help>Split protein/peptide identification file into several files according to annotated file origin. + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRipper.html</help> +</tool>