Mercurial > repos > galaxyp > openms_isobaricanalyzer
annotate IsobaricAnalyzer.xml @ 14:30f67afbf5be draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
| author | galaxyp |
|---|---|
| date | Fri, 14 Jun 2024 21:32:32 +0000 |
| parents | 130ffca1ec5b |
| children |
| rev | line source |
|---|---|
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edb972ad2c81
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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1 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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2 <!--Proposed Tool Section: [Quantitation]--> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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3 <tool id="IsobaricAnalyzer" name="IsobaricAnalyzer" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
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4 <description>Calculates isobaric quantitative values for peptides</description> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
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5 <macros> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
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6 <token name="@EXECUTABLE@">IsobaricAnalyzer</token> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
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7 <import>macros.xml</import> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
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8 </macros> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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9 <expand macro="requirements"/> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
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10 <expand macro="stdio"/> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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11 <command detect_errors="exit_code"><![CDATA[@QUOTE_FOO@ |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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12 @EXT_FOO@ |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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13 #import re |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
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14 |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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15 ## Preprocessing |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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16 mkdir in && |
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14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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17 cp '$in' 'in/${re.sub("[^\w\-_]", "_", $in.element_identifier)}.$gxy2omsext($in.ext)' && |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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18 mkdir out && |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
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19 |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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20 ## Main program call |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
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21 |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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22 set -o pipefail && |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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23 @EXECUTABLE@ -write_ctd ./ && |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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24 python3 '$__tool_directory__/fill_ctd.py' '@EXECUTABLE@.ctd' '$args_json' '$hardcoded_json' && |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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25 @EXECUTABLE@ -ini @EXECUTABLE@.ctd |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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26 -in |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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27 'in/${re.sub("[^\w\-_]", "_", $in.element_identifier)}.$gxy2omsext($in.ext)' |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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28 -out |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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29 'out/output.${gxy2omsext("consensusxml")}' |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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30 |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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31 ## Postprocessing |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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32 && mv 'out/output.${gxy2omsext("consensusxml")}' '$out' |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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33 #if "ctd_out_FLAG" in $OPTIONAL_OUTPUTS |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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34 && mv '@EXECUTABLE@.ctd' '$ctd_out' |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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35 #end if]]></command> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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36 <configfiles> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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37 <inputs name="args_json" data_style="paths"/> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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38 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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39 </configfiles> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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40 <inputs> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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41 <param argument="-type" type="select" label="Isobaric Quantitation method used in the experiment" help=""> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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42 <option value="itraq4plex" selected="true">itraq4plex</option> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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43 <option value="itraq8plex">itraq8plex</option> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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44 <option value="tmt10plex">tmt10plex</option> |
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edb972ad2c81
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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45 <option value="tmt11plex">tmt11plex</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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46 <option value="tmt16plex">tmt16plex</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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47 <option value="tmt18plex">tmt18plex</option> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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48 <option value="tmt6plex">tmt6plex</option> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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49 <expand macro="list_string_san" name="type"/> |
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916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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50 </param> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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51 <param argument="-in" type="data" format="mzml" label="input raw/picked data file" help=" select mzml data sets(s)"/> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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52 <section name="extraction" title="Parameters for the channel extraction" help="" expanded="false"> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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53 <param name="select_activation" argument="-extraction:select_activation" type="select" label="Operate only on MSn scans where any of its precursors features a certain activation method" help="Setting to "auto" uses HCD and HCID spectra. Set to empty string if you want to disable filtering"> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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54 <option value="auto" selected="true">auto</option> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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55 <option value="Collision-induced dissociation">Collision-induced dissociation</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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56 <option value="Post-source decay">Post-source decay</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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57 <option value="Plasma desorption">Plasma desorption</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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58 <option value="Surface-induced dissociation">Surface-induced dissociation</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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59 <option value="Blackbody infrared radiative dissociation">Blackbody infrared radiative dissociation</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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60 <option value="Electron capture dissociation">Electron capture dissociation</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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61 <option value="Infrared multiphoton dissociation">Infrared multiphoton dissociation</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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62 <option value="Sustained off-resonance irradiation">Sustained off-resonance irradiation</option> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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63 <option value="High-energy collision-induced dissociation">High-energy collision-induced dissociation</option> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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64 <option value="Low-energy collision-induced dissociation">Low-energy collision-induced dissociation</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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65 <option value="Photodissociation">Photodissociation</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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66 <option value="Electron transfer dissociation">Electron transfer dissociation</option> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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67 <option value="Pulsed q dissociation">Pulsed q dissociation</option> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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68 <option value="trap-type collision-induced dissociation">trap-type collision-induced dissociation</option> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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69 <option value="beam-type collision-induced dissociation">beam-type collision-induced dissociation</option> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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70 <option value="in-source collision-induced dissociation">in-source collision-induced dissociation</option> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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71 <option value="any">any</option> |
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72 <expand macro="list_string_san" name="select_activation"/> |
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73 </param> |
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74 <param name="reporter_mass_shift" argument="-extraction:reporter_mass_shift" type="float" min="0.0001" max="0.5" value="0.002" label="Allowed shift (left to right) in Th from the expected position" help=""/> |
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75 <param name="min_precursor_intensity" argument="-extraction:min_precursor_intensity" type="float" min="0.0" value="1.0" label="Minimum intensity of the precursor to be extracted" help="MS/MS scans having a precursor with a lower intensity will not be considered for quantitation"/> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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76 <param name="keep_unannotated_precursor" argument="-extraction:keep_unannotated_precursor" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Flag if precursor with missing intensity value or missing precursor spectrum should be included or not" help=""/> |
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77 <param name="min_reporter_intensity" argument="-extraction:min_reporter_intensity" type="float" min="0.0" value="0.0" label="Minimum intensity of the individual reporter ions to be extracted" help=""/> |
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78 <param name="discard_low_intensity_quantifications" argument="-extraction:discard_low_intensity_quantifications" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Remove all reporter intensities if a single reporter is below the threshold given in 'min_reporter_intensity'" help=""/> |
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79 <param name="min_precursor_purity" argument="-extraction:min_precursor_purity" type="float" min="0.0" max="1.0" value="0.0" label="Minimum fraction of the total intensity in the isolation window of the precursor spectrum attributable to the selected precurso" help=""/> |
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80 <param name="precursor_isotope_deviation" argument="-extraction:precursor_isotope_deviation" type="float" min="0.0" value="10.0" label="Maximum allowed deviation (in ppm) between theoretical and observed isotopic peaks of the precursor peak in the isolation window to be counted as part of the precurso" help=""/> |
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81 <param name="purity_interpolation" argument="-extraction:purity_interpolation" type="boolean" truevalue="true" falsevalue="false" checked="true" label="If set to true the algorithm will try to compute the purity as a time weighted linear combination of the precursor scan and the following scan" help="If set to false, only the precursor scan will be used"/> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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82 </section> |
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83 <section name="itraq4plex" title="Algorithm parameters for iTRAQ 4-plex" help="" expanded="false"> |
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84 <param name="channel_114_description" argument="-itraq4plex:channel_114_description" type="text" optional="true" value="" label="Description for the content of the 114 channel" help=""> |
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85 <expand macro="list_string_san" name="channel_114_description"/> |
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86 </param> |
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87 <param name="channel_115_description" argument="-itraq4plex:channel_115_description" type="text" optional="true" value="" label="Description for the content of the 115 channel" help=""> |
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88 <expand macro="list_string_san" name="channel_115_description"/> |
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89 </param> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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90 <param name="channel_116_description" argument="-itraq4plex:channel_116_description" type="text" optional="true" value="" label="Description for the content of the 116 channel" help=""> |
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91 <expand macro="list_string_san" name="channel_116_description"/> |
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92 </param> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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93 <param name="channel_117_description" argument="-itraq4plex:channel_117_description" type="text" optional="true" value="" label="Description for the content of the 117 channel" help=""> |
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94 <expand macro="list_string_san" name="channel_117_description"/> |
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95 </param> |
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96 <param name="reference_channel" argument="-itraq4plex:reference_channel" type="integer" min="114" max="117" value="114" label="Number of the reference channel (114-117)" help=""/> |
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97 <param name="correction_matrix" argument="-itraq4plex:correction_matrix" type="text" value="0.0/1.0/5.9/0.2 0.0/2.0/5.6/0.1 0.0/3.0/4.5/0.1 0.1/4.0/3.5/0.1" label="Correction matrix for isotope distributions (see documentation); use the following format: <-2Da>/<-1Da>/<+1Da>/<+2Da>;" help="e.g. '0/0.3/4/0', '0.1/0.3/3/0.2' (space separated list, in order to allow for spaces in list items surround them by single quotes)"> |
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98 <expand macro="list_string_val" name="correction_matrix"/> |
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99 <expand macro="list_string_san" name="correction_matrix"/> |
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100 </param> |
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101 </section> |
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102 <section name="itraq8plex" title="Algorithm parameters for iTRAQ 8-plex" help="" expanded="false"> |
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103 <param name="channel_113_description" argument="-itraq8plex:channel_113_description" type="text" optional="true" value="" label="Description for the content of the 113 channel" help=""> |
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104 <expand macro="list_string_san" name="channel_113_description"/> |
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105 </param> |
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106 <param name="channel_114_description" argument="-itraq8plex:channel_114_description" type="text" optional="true" value="" label="Description for the content of the 114 channel" help=""> |
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107 <expand macro="list_string_san" name="channel_114_description"/> |
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108 </param> |
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109 <param name="channel_115_description" argument="-itraq8plex:channel_115_description" type="text" optional="true" value="" label="Description for the content of the 115 channel" help=""> |
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110 <expand macro="list_string_san" name="channel_115_description"/> |
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111 </param> |
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112 <param name="channel_116_description" argument="-itraq8plex:channel_116_description" type="text" optional="true" value="" label="Description for the content of the 116 channel" help=""> |
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113 <expand macro="list_string_san" name="channel_116_description"/> |
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114 </param> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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115 <param name="channel_117_description" argument="-itraq8plex:channel_117_description" type="text" optional="true" value="" label="Description for the content of the 117 channel" help=""> |
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116 <expand macro="list_string_san" name="channel_117_description"/> |
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117 </param> |
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118 <param name="channel_118_description" argument="-itraq8plex:channel_118_description" type="text" optional="true" value="" label="Description for the content of the 118 channel" help=""> |
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119 <expand macro="list_string_san" name="channel_118_description"/> |
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120 </param> |
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121 <param name="channel_119_description" argument="-itraq8plex:channel_119_description" type="text" optional="true" value="" label="Description for the content of the 119 channel" help=""> |
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122 <expand macro="list_string_san" name="channel_119_description"/> |
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123 </param> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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124 <param name="channel_121_description" argument="-itraq8plex:channel_121_description" type="text" optional="true" value="" label="Description for the content of the 121 channel" help=""> |
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125 <expand macro="list_string_san" name="channel_121_description"/> |
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126 </param> |
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127 <param name="reference_channel" argument="-itraq8plex:reference_channel" type="integer" min="113" max="121" value="113" label="Number of the reference channel (113-121)" help="Please note that 120 is not valid"/> |
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128 <param name="correction_matrix" argument="-itraq8plex:correction_matrix" type="text" value="0.00/0.00/6.89/0.22 0.00/0.94/5.90/0.16 0.00/1.88/4.90/0.10 0.00/2.82/3.90/0.07 0.06/3.77/2.99/0.00 0.09/4.71/1.88/0.00 0.14/5.66/0.87/0.00 0.27/7.44/0.18/0.00" label="Correction matrix for isotope distributions (see documentation); use the following format: <-2Da>/<-1Da>/<+1Da>/<+2Da>;" help="e.g. '0/0.3/4/0', '0.1/0.3/3/0.2' (space separated list, in order to allow for spaces in list items surround them by single quotes)"> |
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129 <expand macro="list_string_val" name="correction_matrix"/> |
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130 <expand macro="list_string_san" name="correction_matrix"/> |
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131 </param> |
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132 </section> |
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133 <section name="quantification" title="Parameters for the peptide quantification" help="" expanded="false"> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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134 <param name="isotope_correction" argument="-quantification:isotope_correction" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Enable isotope correction (highly recommended)" help="Note that you need to provide a correct isotope correction matrix otherwise the tool will fail or produce invalid results"/> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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135 <param name="normalization" argument="-quantification:normalization" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Enable normalization of channel intensities with respect to the reference channel" help="The normalization is done by using the Median of Ratios (every channel / Reference). Also the ratio of medians (from any channel and reference) is provided as control measure!"/> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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136 </section> |
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137 <section name="tmt10plex" title="Algorithm parameters for TMT 10-plex" help="" expanded="false"> |
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138 <param name="channel_126_description" argument="-tmt10plex:channel_126_description" type="text" optional="true" value="" label="Description for the content of the 126 channel" help=""> |
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139 <expand macro="list_string_san" name="channel_126_description"/> |
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140 </param> |
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141 <param name="channel_127N_description" argument="-tmt10plex:channel_127N_description" type="text" optional="true" value="" label="Description for the content of the 127N channel" help=""> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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142 <expand macro="list_string_san" name="channel_127N_description"/> |
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143 </param> |
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144 <param name="channel_127C_description" argument="-tmt10plex:channel_127C_description" type="text" optional="true" value="" label="Description for the content of the 127C channel" help=""> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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145 <expand macro="list_string_san" name="channel_127C_description"/> |
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146 </param> |
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147 <param name="channel_128N_description" argument="-tmt10plex:channel_128N_description" type="text" optional="true" value="" label="Description for the content of the 128N channel" help=""> |
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148 <expand macro="list_string_san" name="channel_128N_description"/> |
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149 </param> |
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150 <param name="channel_128C_description" argument="-tmt10plex:channel_128C_description" type="text" optional="true" value="" label="Description for the content of the 128C channel" help=""> |
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151 <expand macro="list_string_san" name="channel_128C_description"/> |
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152 </param> |
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153 <param name="channel_129N_description" argument="-tmt10plex:channel_129N_description" type="text" optional="true" value="" label="Description for the content of the 129N channel" help=""> |
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154 <expand macro="list_string_san" name="channel_129N_description"/> |
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155 </param> |
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156 <param name="channel_129C_description" argument="-tmt10plex:channel_129C_description" type="text" optional="true" value="" label="Description for the content of the 129C channel" help=""> |
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157 <expand macro="list_string_san" name="channel_129C_description"/> |
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158 </param> |
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159 <param name="channel_130N_description" argument="-tmt10plex:channel_130N_description" type="text" optional="true" value="" label="Description for the content of the 130N channel" help=""> |
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160 <expand macro="list_string_san" name="channel_130N_description"/> |
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161 </param> |
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162 <param name="channel_130C_description" argument="-tmt10plex:channel_130C_description" type="text" optional="true" value="" label="Description for the content of the 130C channel" help=""> |
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163 <expand macro="list_string_san" name="channel_130C_description"/> |
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164 </param> |
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165 <param name="channel_131_description" argument="-tmt10plex:channel_131_description" type="text" optional="true" value="" label="Description for the content of the 131 channel" help=""> |
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166 <expand macro="list_string_san" name="channel_131_description"/> |
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167 </param> |
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168 <param name="reference_channel" argument="-tmt10plex:reference_channel" type="select" label="The reference channel (126, 127N, 127C, 128N, 128C, 129N, 129C, 130N, 130C, 131)" help=""> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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169 <option value="126" selected="true">126</option> |
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170 <option value="127N">127N</option> |
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171 <option value="127C">127C</option> |
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172 <option value="128N">128N</option> |
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173 <option value="128C">128C</option> |
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174 <option value="129N">129N</option> |
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175 <option value="129C">129C</option> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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176 <option value="130N">130N</option> |
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177 <option value="130C">130C</option> |
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178 <option value="131">131</option> |
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179 <expand macro="list_string_san" name="reference_channel"/> |
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180 </param> |
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181 <param name="correction_matrix" argument="-tmt10plex:correction_matrix" type="text" value="0.0/0.0/5.09/0.0 0.0/0.25/5.27/0.0 0.0/0.37/5.36/0.15 0.0/0.65/4.17/0.1 0.08/0.49/3.06/0.0 0.01/0.71/3.07/0.0 0.0/1.32/2.62/0.0 0.02/1.28/2.75/2.53 0.03/2.08/2.23/0.0 0.08/1.99/1.65/0.0" label="Correction matrix for isotope distributions (see documentation); use the following format: <-2Da>/<-1Da>/<+1Da>/<+2Da>;" help="e.g. '0/0.3/4/0', '0.1/0.3/3/0.2' (space separated list, in order to allow for spaces in list items surround them by single quotes)"> |
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182 <expand macro="list_string_val" name="correction_matrix"/> |
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183 <expand macro="list_string_san" name="correction_matrix"/> |
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184 </param> |
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185 </section> |
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186 <section name="tmt11plex" title="Algorithm parameters for TMT 11-plex" help="" expanded="false"> |
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187 <param name="channel_126_description" argument="-tmt11plex:channel_126_description" type="text" optional="true" value="" label="Description for the content of the 126 channel" help=""> |
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188 <expand macro="list_string_san" name="channel_126_description"/> |
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189 </param> |
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190 <param name="channel_127N_description" argument="-tmt11plex:channel_127N_description" type="text" optional="true" value="" label="Description for the content of the 127N channel" help=""> |
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191 <expand macro="list_string_san" name="channel_127N_description"/> |
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192 </param> |
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193 <param name="channel_127C_description" argument="-tmt11plex:channel_127C_description" type="text" optional="true" value="" label="Description for the content of the 127C channel" help=""> |
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194 <expand macro="list_string_san" name="channel_127C_description"/> |
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195 </param> |
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196 <param name="channel_128N_description" argument="-tmt11plex:channel_128N_description" type="text" optional="true" value="" label="Description for the content of the 128N channel" help=""> |
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197 <expand macro="list_string_san" name="channel_128N_description"/> |
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0
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198 </param> |
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199 <param name="channel_128C_description" argument="-tmt11plex:channel_128C_description" type="text" optional="true" value="" label="Description for the content of the 128C channel" help=""> |
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13
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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200 <expand macro="list_string_san" name="channel_128C_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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201 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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202 <param name="channel_129N_description" argument="-tmt11plex:channel_129N_description" type="text" optional="true" value="" label="Description for the content of the 129N channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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203 <expand macro="list_string_san" name="channel_129N_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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204 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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205 <param name="channel_129C_description" argument="-tmt11plex:channel_129C_description" type="text" optional="true" value="" label="Description for the content of the 129C channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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206 <expand macro="list_string_san" name="channel_129C_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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207 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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208 <param name="channel_130N_description" argument="-tmt11plex:channel_130N_description" type="text" optional="true" value="" label="Description for the content of the 130N channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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209 <expand macro="list_string_san" name="channel_130N_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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210 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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211 <param name="channel_130C_description" argument="-tmt11plex:channel_130C_description" type="text" optional="true" value="" label="Description for the content of the 130C channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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212 <expand macro="list_string_san" name="channel_130C_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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213 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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214 <param name="channel_131N_description" argument="-tmt11plex:channel_131N_description" type="text" optional="true" value="" label="Description for the content of the 131N channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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215 <expand macro="list_string_san" name="channel_131N_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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216 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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217 <param name="channel_131C_description" argument="-tmt11plex:channel_131C_description" type="text" optional="true" value="" label="Description for the content of the 131C channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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218 <expand macro="list_string_san" name="channel_131C_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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219 </param> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
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220 <param name="reference_channel" argument="-tmt11plex:reference_channel" type="select" label="The reference channel (126, 127N, 127C, 128N, 128C, 129N, 129C, 130N, 130C, 131N, 131C)" help=""> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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221 <option value="126" selected="true">126</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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222 <option value="127N">127N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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223 <option value="127C">127C</option> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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224 <option value="128N">128N</option> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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225 <option value="128C">128C</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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226 <option value="129N">129N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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227 <option value="129C">129C</option> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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228 <option value="130N">130N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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229 <option value="130C">130C</option> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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230 <option value="131N">131N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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231 <option value="131C">131C</option> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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232 <expand macro="list_string_san" name="reference_channel"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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233 </param> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
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234 <param name="correction_matrix" argument="-tmt11plex:correction_matrix" type="text" value="0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0" label="Correction matrix for isotope distributions (see documentation); use the following format: <-2Da>/<-1Da>/<+1Da>/<+2Da>;" help="e.g. '0/0.3/4/0', '0.1/0.3/3/0.2' (space separated list, in order to allow for spaces in list items surround them by single quotes)"> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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235 <expand macro="list_string_val" name="correction_matrix"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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236 <expand macro="list_string_san" name="correction_matrix"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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237 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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238 </section> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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239 <section name="tmt16plex" title="Algorithm parameters for TMT 16-plex" help="" expanded="false"> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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240 <param name="channel_126_description" argument="-tmt16plex:channel_126_description" type="text" optional="true" value="" label="Description for the content of the 126 channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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241 <expand macro="list_string_san" name="channel_126_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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242 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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243 <param name="channel_127N_description" argument="-tmt16plex:channel_127N_description" type="text" optional="true" value="" label="Description for the content of the 127N channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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244 <expand macro="list_string_san" name="channel_127N_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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245 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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246 <param name="channel_127C_description" argument="-tmt16plex:channel_127C_description" type="text" optional="true" value="" label="Description for the content of the 127C channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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247 <expand macro="list_string_san" name="channel_127C_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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248 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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249 <param name="channel_128N_description" argument="-tmt16plex:channel_128N_description" type="text" optional="true" value="" label="Description for the content of the 128N channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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250 <expand macro="list_string_san" name="channel_128N_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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251 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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252 <param name="channel_128C_description" argument="-tmt16plex:channel_128C_description" type="text" optional="true" value="" label="Description for the content of the 128C channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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253 <expand macro="list_string_san" name="channel_128C_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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254 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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255 <param name="channel_129N_description" argument="-tmt16plex:channel_129N_description" type="text" optional="true" value="" label="Description for the content of the 129N channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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256 <expand macro="list_string_san" name="channel_129N_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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257 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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258 <param name="channel_129C_description" argument="-tmt16plex:channel_129C_description" type="text" optional="true" value="" label="Description for the content of the 129C channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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259 <expand macro="list_string_san" name="channel_129C_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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260 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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261 <param name="channel_130N_description" argument="-tmt16plex:channel_130N_description" type="text" optional="true" value="" label="Description for the content of the 130N channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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262 <expand macro="list_string_san" name="channel_130N_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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263 </param> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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264 <param name="channel_130C_description" argument="-tmt16plex:channel_130C_description" type="text" optional="true" value="" label="Description for the content of the 130C channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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265 <expand macro="list_string_san" name="channel_130C_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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266 </param> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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267 <param name="channel_131N_description" argument="-tmt16plex:channel_131N_description" type="text" optional="true" value="" label="Description for the content of the 131N channel" help=""> |
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13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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268 <expand macro="list_string_san" name="channel_131N_description"/> |
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5
edb972ad2c81
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
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269 </param> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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270 <param name="channel_131C_description" argument="-tmt16plex:channel_131C_description" type="text" optional="true" value="" label="Description for the content of the 131C channel" help=""> |
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13
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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271 <expand macro="list_string_san" name="channel_131C_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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272 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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273 <param name="channel_132N_description" argument="-tmt16plex:channel_132N_description" type="text" optional="true" value="" label="Description for the content of the 132N channel" help=""> |
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13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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274 <expand macro="list_string_san" name="channel_132N_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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275 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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276 <param name="channel_132C_description" argument="-tmt16plex:channel_132C_description" type="text" optional="true" value="" label="Description for the content of the 132C channel" help=""> |
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13
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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277 <expand macro="list_string_san" name="channel_132C_description"/> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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278 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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279 <param name="channel_133N_description" argument="-tmt16plex:channel_133N_description" type="text" optional="true" value="" label="Description for the content of the 133N channel" help=""> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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280 <expand macro="list_string_san" name="channel_133N_description"/> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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281 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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282 <param name="channel_133C_description" argument="-tmt16plex:channel_133C_description" type="text" optional="true" value="" label="Description for the content of the 133C channel" help=""> |
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13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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283 <expand macro="list_string_san" name="channel_133C_description"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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284 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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285 <param name="channel_134N_description" argument="-tmt16plex:channel_134N_description" type="text" optional="true" value="" label="Description for the content of the 134N channel" help=""> |
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13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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286 <expand macro="list_string_san" name="channel_134N_description"/> |
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0
916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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287 </param> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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288 <param name="reference_channel" argument="-tmt16plex:reference_channel" type="select" label="The reference channel (126, 127N, 127C, 128N, 128C, 129N, 129C, 130N, 130C, 131N, 131C, 132N, 132C, 133N, 133C, 134N)" help=""> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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289 <option value="126" selected="true">126</option> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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290 <option value="127N">127N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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291 <option value="127C">127C</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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292 <option value="128N">128N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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293 <option value="128C">128C</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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294 <option value="129N">129N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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295 <option value="129C">129C</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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296 <option value="130N">130N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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297 <option value="130C">130C</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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298 <option value="131N">131N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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299 <option value="131C">131C</option> |
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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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300 <option value="132N">132N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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301 <option value="132C">132C</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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302 <option value="133N">133N</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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303 <option value="133C">133C</option> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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304 <option value="134N">134N</option> |
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13
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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305 <expand macro="list_string_san" name="reference_channel"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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306 </param> |
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14
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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307 <param name="correction_matrix" argument="-tmt16plex:correction_matrix" type="text" value=""NA/NA / NA/NA / 0.31/9.09 / 0.02/0.32" "NA/NA / NA/0.78 / NA/9.41 / NA/0.33" "NA/NA / 0.93/NA / 0.35/8.63 / 0.01/0.27" "NA/0.00 / 0.82/0.65 / NA/8.13 / NA/0.26" "0.00/NA / 1.47/NA / 0.34/6.91 / 0.00/0.15" "0.00/0.00 / 1.46/1.28 / NA/6.86 / NA/0.15" "0.13/NA / 2.59/NA / 0.32/6.07 / 0.1/0.09" "0.13/0.00 / 2.41/0.27 / NA/5.58 / NA/0.10" "0.04/NA / 3.10/NA / 0.42/4.82 / 0.02/0.06" "0.03/0.00 / 2.78/0.63 / NA/4.57 / NA/0.12" "0.08/NA / 3.90/NA / 0.47/3.57 / 0.00/0.04" "0.15/0.01 / 3.58/0.72 / NA/1.80 / NA/0.00" "0.11/NA / 4.55/NA / 0.43/1.86 / 0.00/0.00" "0.07/0.01 / 3.14/0.73 / NA/3.40 / NA/0.03" "0.22/NA / 4.96/NA / 0.34/1.03 / 0.00/NA" "0.30/0.03 / 5.49/0.62 / NA/1.14 / NA/NA"" label="Correction matrix for isotope distributions in percent from the Thermo data sheet (see documentation); Please provide 16 entries (rows), separated by comma, where each entry contains 8 values in the following format: <-2C13>/<-N15-C13>/<-C13>/<-N15>/<+N15>/<+C13>/<+N15+C13>/<+2C13" help="e.g. one row may look like this: 'NA/0.00 / 0.82/0.65 / NA/8.13 / NA/0.26'. You may use whitespaces at your leisure to ease reading (space separated list, in order to allow for spaces in list items surround them by single quotes)"> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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308 <expand macro="list_string_val" name="correction_matrix"/> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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309 <expand macro="list_string_san" name="correction_matrix"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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310 </param> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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311 </section> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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312 <section name="tmt18plex" title="Algorithm parameters for TMT 18-plex" help="" expanded="false"> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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313 <param name="channel_126_description" argument="-tmt18plex:channel_126_description" type="text" optional="true" value="" label="Description for the content of the 126 channel" help=""> |
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314 <expand macro="list_string_san" name="channel_126_description"/> |
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315 </param> |
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316 <param name="channel_127N_description" argument="-tmt18plex:channel_127N_description" type="text" optional="true" value="" label="Description for the content of the 127N channel" help=""> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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317 <expand macro="list_string_san" name="channel_127N_description"/> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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318 </param> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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319 <param name="channel_127C_description" argument="-tmt18plex:channel_127C_description" type="text" optional="true" value="" label="Description for the content of the 127C channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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320 <expand macro="list_string_san" name="channel_127C_description"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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321 </param> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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322 <param name="channel_128N_description" argument="-tmt18plex:channel_128N_description" type="text" optional="true" value="" label="Description for the content of the 128N channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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323 <expand macro="list_string_san" name="channel_128N_description"/> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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324 </param> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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325 <param name="channel_128C_description" argument="-tmt18plex:channel_128C_description" type="text" optional="true" value="" label="Description for the content of the 128C channel" help=""> |
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326 <expand macro="list_string_san" name="channel_128C_description"/> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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327 </param> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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328 <param name="channel_129N_description" argument="-tmt18plex:channel_129N_description" type="text" optional="true" value="" label="Description for the content of the 129N channel" help=""> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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329 <expand macro="list_string_san" name="channel_129N_description"/> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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330 </param> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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331 <param name="channel_129C_description" argument="-tmt18plex:channel_129C_description" type="text" optional="true" value="" label="Description for the content of the 129C channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
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332 <expand macro="list_string_san" name="channel_129C_description"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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333 </param> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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334 <param name="channel_130N_description" argument="-tmt18plex:channel_130N_description" type="text" optional="true" value="" label="Description for the content of the 130N channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
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335 <expand macro="list_string_san" name="channel_130N_description"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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336 </param> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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337 <param name="channel_130C_description" argument="-tmt18plex:channel_130C_description" type="text" optional="true" value="" label="Description for the content of the 130C channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
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338 <expand macro="list_string_san" name="channel_130C_description"/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
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339 </param> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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340 <param name="channel_131N_description" argument="-tmt18plex:channel_131N_description" type="text" optional="true" value="" label="Description for the content of the 131N channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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341 <expand macro="list_string_san" name="channel_131N_description"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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342 </param> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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343 <param name="channel_131C_description" argument="-tmt18plex:channel_131C_description" type="text" optional="true" value="" label="Description for the content of the 131C channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
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344 <expand macro="list_string_san" name="channel_131C_description"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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345 </param> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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346 <param name="channel_132N_description" argument="-tmt18plex:channel_132N_description" type="text" optional="true" value="" label="Description for the content of the 132N channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
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347 <expand macro="list_string_san" name="channel_132N_description"/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
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348 </param> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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349 <param name="channel_132C_description" argument="-tmt18plex:channel_132C_description" type="text" optional="true" value="" label="Description for the content of the 132C channel" help=""> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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350 <expand macro="list_string_san" name="channel_132C_description"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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351 </param> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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352 <param name="channel_133N_description" argument="-tmt18plex:channel_133N_description" type="text" optional="true" value="" label="Description for the content of the 133N channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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353 <expand macro="list_string_san" name="channel_133N_description"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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354 </param> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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355 <param name="channel_133C_description" argument="-tmt18plex:channel_133C_description" type="text" optional="true" value="" label="Description for the content of the 133C channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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356 <expand macro="list_string_san" name="channel_133C_description"/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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357 </param> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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358 <param name="channel_134N_description" argument="-tmt18plex:channel_134N_description" type="text" optional="true" value="" label="Description for the content of the 134N channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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359 <expand macro="list_string_san" name="channel_134N_description"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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360 </param> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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361 <param name="channel_134C_description" argument="-tmt18plex:channel_134C_description" type="text" optional="true" value="" label="Description for the content of the 134C channel" help=""> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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362 <expand macro="list_string_san" name="channel_134C_description"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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363 </param> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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364 <param name="channel_135N_description" argument="-tmt18plex:channel_135N_description" type="text" optional="true" value="" label="Description for the content of the 135N channel" help=""> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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365 <expand macro="list_string_san" name="channel_135N_description"/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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366 </param> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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367 <param name="reference_channel" argument="-tmt18plex:reference_channel" type="select" label="The reference channel (126, 127N, 127C, 128N, 128C, 129N, 129C, 130N, 130C, 131N, 131C, 132N, 132C, 133N, 133C, 134N, 134C, 135N)" help=""> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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368 <option value="126" selected="true">126</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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369 <option value="127N">127N</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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370 <option value="127C">127C</option> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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371 <option value="128N">128N</option> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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372 <option value="128C">128C</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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373 <option value="129N">129N</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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374 <option value="129C">129C</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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375 <option value="130N">130N</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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376 <option value="130C">130C</option> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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377 <option value="131N">131N</option> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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378 <option value="131C">131C</option> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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379 <option value="132N">132N</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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380 <option value="132C">132C</option> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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381 <option value="133N">133N</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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382 <option value="133C">133C</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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383 <option value="134N">134N</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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384 <option value="134C">134C</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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385 <option value="135N">135N</option> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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386 <expand macro="list_string_san" name="reference_channel"/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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387 </param> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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388 <param name="correction_matrix" argument="-tmt18plex:correction_matrix" type="text" value=""NA/NA /NA/NA /0.31/9.09 /0.02/0.32" "NA/NA /NA/0.78 /NA/9.41 /NA/0.33" "NA/NA /0.93/NA /0.35/8.63 /0.01/0.27" "NA/0.00 /0.82/0.65 /NA/8.13 /NA/0.26" "0.00/NA /1.47/NA /0.34/6.91 /0.00/0.15" "0.00/0.00 /1.46/1.28 /NA/6.86 /NA/0.15" "0.13/NA /2.59/NA /0.32/6.07 /0.1/0.09" "0.13/0.00 /2.41/0.27 /NA/5.58 /NA/0.10" "0.04/NA /3.10/NA /0.42/4.82 /0.02/0.06" "0.03/0.00 /2.78/0.63 /NA/4.57 /NA/0.12" "0.08/NA /3.90/NA /0.47/3.57 /0.00/0.04" "0.15/0.01 /3.58/0.72 /NA/1.80 /NA/0.00" "0.11/NA /4.55/NA /0.43/1.86 /0.00/0.00" "0.07/0.01 /3.14/0.73 /NA/3.40 /NA/0.03" "0.22/NA /4.96/NA /0.34/1.03 /0.00/NA" "0.30/0.03 /5.49/0.62 /NA/1.14 /NA/NA" "0.14/NA /5.81/NA /0.31/NA /NA/NA" "0.19/0.02 /5.42/0.36 /NA/NA /NA/NA"" label="Correction matrix for isotope distributions in percent from the Thermo data sheet (see documentation); Please provide 18 entries (rows), separated by comma, where each entry contains 8 values in the following format: <-2C13>/<-N15-C13>/<-C13>/<-N15>/<+N15>/<+C13>/<+N15+C13>/<+2C13" help="e.g. one row may look like this: 'NA/0.00 / 0.82/0.65 / NA/8.13 / NA/0.26'. You may use whitespaces at your leisure to ease reading (space separated list, in order to allow for spaces in list items surround them by single quotes)"> |
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13
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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389 <expand macro="list_string_val" name="correction_matrix"/> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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390 <expand macro="list_string_san" name="correction_matrix"/> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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391 </param> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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392 </section> |
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d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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|
393 <section name="tmt6plex" title="Algorithm parameters for TMT 6-plex" help="" expanded="false"> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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394 <param name="channel_126_description" argument="-tmt6plex:channel_126_description" type="text" optional="true" value="" label="Description for the content of the 126 channel" help=""> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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395 <expand macro="list_string_san" name="channel_126_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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396 </param> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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397 <param name="channel_127_description" argument="-tmt6plex:channel_127_description" type="text" optional="true" value="" label="Description for the content of the 127 channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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398 <expand macro="list_string_san" name="channel_127_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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|
399 </param> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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400 <param name="channel_128_description" argument="-tmt6plex:channel_128_description" type="text" optional="true" value="" label="Description for the content of the 128 channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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401 <expand macro="list_string_san" name="channel_128_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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|
402 </param> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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403 <param name="channel_129_description" argument="-tmt6plex:channel_129_description" type="text" optional="true" value="" label="Description for the content of the 129 channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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changeset
|
404 <expand macro="list_string_san" name="channel_129_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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|
405 </param> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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406 <param name="channel_130_description" argument="-tmt6plex:channel_130_description" type="text" optional="true" value="" label="Description for the content of the 130 channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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407 <expand macro="list_string_san" name="channel_130_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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|
408 </param> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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409 <param name="channel_131_description" argument="-tmt6plex:channel_131_description" type="text" optional="true" value="" label="Description for the content of the 131 channel" help=""> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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410 <expand macro="list_string_san" name="channel_131_description"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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|
411 </param> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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412 <param name="reference_channel" argument="-tmt6plex:reference_channel" type="integer" min="126" max="131" value="126" label="Number of the reference channel (126-131)" help=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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413 <param name="correction_matrix" argument="-tmt6plex:correction_matrix" type="text" value="0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0 0.0/0.0/0.0/0.0" label="Correction matrix for isotope distributions (see documentation); use the following format: <-2Da>/<-1Da>/<+1Da>/<+2Da>;" help="e.g. '0/0.3/4/0', '0.1/0.3/3/0.2' (space separated list, in order to allow for spaces in list items surround them by single quotes)"> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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414 <expand macro="list_string_val" name="correction_matrix"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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415 <expand macro="list_string_san" name="correction_matrix"/> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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416 </param> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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417 </section> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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418 <expand macro="adv_opts_macro"> |
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13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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419 <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> |
|
14
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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420 <param argument="-test" type="hidden" value="False" label="Enables the test mode (needed for internal use only)" help="" optional="true"> |
|
13
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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421 <expand macro="list_string_san" name="test"/> |
|
0
916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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422 </param> |
|
916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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423 </expand> |
|
11
57a06b90bb00
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
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424 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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425 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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426 </param> |
|
0
916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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|
427 </inputs> |
|
916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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428 <outputs> |
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9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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429 <data name="out" label="${tool.name} on ${on_string}: out" format="consensusxml"/> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
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430 <data name="ctd_out" format="xml" label="${tool.name} on ${on_string}: ctd"> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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431 <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
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432 </data> |
|
0
916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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433 </outputs> |
|
14
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434 <tests> |
|
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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435 <!-- TOPP_IsobaricAnalyzer_1 --> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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436 <test expect_num_outputs="2"> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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437 <section name="adv_opts"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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438 <param name="force" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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439 <param name="test" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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440 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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441 <param name="type" value="itraq4plex"/> |
|
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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442 <param name="in" value="IsobaricAnalyzer_input_1.mzML"/> |
|
14
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443 <output name="out" value="IsobaricAnalyzer_output_1.consensusXML" compare="sim_size" delta_frac="0.7" ftype="consensusxml"/> |
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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444 <section name="extraction"> |
|
14
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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445 <param name="select_activation" value="any"/> |
|
13
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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446 <param name="reporter_mass_shift" value="0.1"/> |
|
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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447 <param name="min_precursor_intensity" value="1.0"/> |
|
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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448 <param name="keep_unannotated_precursor" value="true"/> |
|
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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449 <param name="min_reporter_intensity" value="0.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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450 <param name="discard_low_intensity_quantifications" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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451 <param name="min_precursor_purity" value="0.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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452 <param name="precursor_isotope_deviation" value="10.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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453 <param name="purity_interpolation" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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454 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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455 <section name="itraq4plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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|
456 <param name="channel_114_description" value="l1"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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457 <param name="channel_115_description" value="l2"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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458 <param name="channel_116_description" value="l3"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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459 <param name="channel_117_description" value="lung"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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460 <param name="reference_channel" value="114"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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461 <param name="correction_matrix" value=""0.0/1.0/5.9/0.2" "0.0/2.0/5.6/0.1" "0.0/3.0/4.5/0.1" "0.1/4.0/3.5/0.1""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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462 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
463 <section name="itraq8plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
464 <param name="channel_113_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
465 <param name="channel_114_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
466 <param name="channel_115_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
467 <param name="channel_116_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
468 <param name="channel_117_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
469 <param name="channel_118_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
470 <param name="channel_119_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
471 <param name="channel_121_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
472 <param name="reference_channel" value="113"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
473 <param name="correction_matrix" value=""0.00/0.00/6.89/0.22" "0.00/0.94/5.90/0.16" "0.00/1.88/4.90/0.10" "0.00/2.82/3.90/0.07" "0.06/3.77/2.99/0.00" "0.09/4.71/1.88/0.00" "0.14/5.66/0.87/0.00" "0.27/7.44/0.18/0.00""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
474 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
475 <section name="quantification"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
476 <param name="isotope_correction" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
477 <param name="normalization" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
478 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
479 <section name="tmt10plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
480 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
481 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
482 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
483 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
484 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
485 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
486 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
487 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
488 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
489 <param name="channel_131_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
490 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
491 <param name="correction_matrix" value=""0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
492 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
493 <section name="tmt11plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
494 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
495 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
496 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
497 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
498 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
499 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
500 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
501 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
502 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
503 <param name="channel_131N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
504 <param name="channel_131C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
505 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
506 <param name="correction_matrix" value=""0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
507 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
508 <section name="tmt16plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
509 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
510 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
511 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
512 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
513 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
514 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
515 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
516 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
517 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
518 <param name="channel_131N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
519 <param name="channel_131C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
520 <param name="channel_132N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
521 <param name="channel_132C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
522 <param name="channel_133N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
523 <param name="channel_133C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
524 <param name="channel_134N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
525 <param name="reference_channel" value="126"/> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
526 <param name="correction_matrix" value=""NA/NA / NA/NA / 0.31/9.09 / 0.02/0.32" "NA/NA / NA/0.78 / NA/9.41 / NA/0.33" "NA/NA / 0.93/NA / 0.35/8.63 / 0.01/0.27" "NA/0.00 / 0.82/0.65 / NA/8.13 / NA/0.26" "0.00/NA / 1.47/NA / 0.34/6.91 / 0.00/0.15" "0.00/0.00 / 1.46/1.28 / NA/6.86 / NA/0.15" "0.13/NA / 2.59/NA / 0.32/6.07 / 0.1/0.09" "0.13/0.00 / 2.41/0.27 / NA/5.58 / NA/0.10" "0.04/NA / 3.10/NA / 0.42/4.82 / 0.02/0.06" "0.03/0.00 / 2.78/0.63 / NA/4.57 / NA/0.12" "0.08/NA / 3.90/NA / 0.47/3.57 / 0.00/0.04" "0.15/0.01 / 3.58/0.72 / NA/1.80 / NA/0.00" "0.11/NA / 4.55/NA / 0.43/1.86 / 0.00/0.00" "0.07/0.01 / 3.14/0.73 / NA/3.40 / NA/0.03" "0.22/NA / 4.96/NA / 0.34/1.03 / 0.00/NA" "0.30/0.03 / 5.49/0.62 / NA/1.14 / NA/NA""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
527 </section> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
528 <section name="tmt18plex"> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
529 <param name="channel_126_description" value=""/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
530 <param name="channel_127N_description" value=""/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
531 <param name="channel_127C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
532 <param name="channel_128N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
533 <param name="channel_128C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
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534 <param name="channel_129N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
535 <param name="channel_129C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
536 <param name="channel_130N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
537 <param name="channel_130C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
538 <param name="channel_131N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
539 <param name="channel_131C_description" value=""/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
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540 <param name="channel_132N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
541 <param name="channel_132C_description" value=""/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
542 <param name="channel_133N_description" value=""/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
543 <param name="channel_133C_description" value=""/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
544 <param name="channel_134N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
545 <param name="channel_134C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
546 <param name="channel_135N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
547 <param name="reference_channel" value="126"/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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548 <param name="correction_matrix" value=""NA/NA /NA/NA /0.31/9.09 /0.02/0.32" "NA/NA /NA/0.78 /NA/9.41 /NA/0.33" "NA/NA /0.93/NA /0.35/8.63 /0.01/0.27" "NA/0.00 /0.82/0.65 /NA/8.13 /NA/0.26" "0.00/NA /1.47/NA /0.34/6.91 /0.00/0.15" "0.00/0.00 /1.46/1.28 /NA/6.86 /NA/0.15" "0.13/NA /2.59/NA /0.32/6.07 /0.1/0.09" "0.13/0.00 /2.41/0.27 /NA/5.58 /NA/0.10" "0.04/NA /3.10/NA /0.42/4.82 /0.02/0.06" "0.03/0.00 /2.78/0.63 /NA/4.57 /NA/0.12" "0.08/NA /3.90/NA /0.47/3.57 /0.00/0.04" "0.15/0.01 /3.58/0.72 /NA/1.80 /NA/0.00" "0.11/NA /4.55/NA /0.43/1.86 /0.00/0.00" "0.07/0.01 /3.14/0.73 /NA/3.40 /NA/0.03" "0.22/NA /4.96/NA /0.34/1.03 /0.00/NA" "0.30/0.03 /5.49/0.62 /NA/1.14 /NA/NA" "0.14/NA /5.81/NA /0.31/NA /NA/NA" "0.19/0.02 /5.42/0.36 /NA/NA /NA/NA""/> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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|
549 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
550 <section name="tmt6plex"> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
551 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
552 <param name="channel_127_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
553 <param name="channel_128_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
554 <param name="channel_129_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
|
555 <param name="channel_130_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
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556 <param name="channel_131_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
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557 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
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558 <param name="correction_matrix" value=""0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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parents:
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diff
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559 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
560 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
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changeset
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561 <output name="ctd_out" ftype="xml"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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parents:
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diff
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562 <assert_contents> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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|
563 <is_valid_xml/> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
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564 </assert_contents> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
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|
565 </output> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
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566 <assert_stdout> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
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567 <has_text_matching expression="@EXECUTABLE@ took .* \(wall\), .* \(CPU\), .* \(system\), .* \(user\)(; Peak Memory Usage: 32 MB)?."/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
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|
568 </assert_stdout> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
569 </test> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
570 <!-- TOPP_IsobaricAnalyzer_TMTTenPlexMethod_1 --> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
571 <test expect_num_outputs="2"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
572 <section name="adv_opts"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
573 <param name="force" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
574 <param name="test" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
575 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
576 <param name="type" value="itraq4plex"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
577 <param name="in" value="TMTTenPlexMethod_test.mzML"/> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
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|
578 <output name="out" value="TMTTenPlexMethod_test.consensusXML" compare="sim_size" delta_frac="0.7" ftype="consensusxml"/> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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parents:
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diff
changeset
|
579 <section name="extraction"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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580 <param name="select_activation" value="auto"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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581 <param name="reporter_mass_shift" value="0.002"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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582 <param name="min_precursor_intensity" value="1.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
|
583 <param name="keep_unannotated_precursor" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
584 <param name="min_reporter_intensity" value="0.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
585 <param name="discard_low_intensity_quantifications" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
586 <param name="min_precursor_purity" value="0.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
587 <param name="precursor_isotope_deviation" value="10.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
588 <param name="purity_interpolation" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
589 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
590 <section name="itraq4plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
591 <param name="channel_114_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
592 <param name="channel_115_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
593 <param name="channel_116_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
594 <param name="channel_117_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
595 <param name="reference_channel" value="114"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
596 <param name="correction_matrix" value=""0.0/1.0/5.9/0.2" "0.0/2.0/5.6/0.1" "0.0/3.0/4.5/0.1" "0.1/4.0/3.5/0.1""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
597 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
598 <section name="itraq8plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
599 <param name="channel_113_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
600 <param name="channel_114_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
601 <param name="channel_115_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
602 <param name="channel_116_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
603 <param name="channel_117_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
604 <param name="channel_118_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
605 <param name="channel_119_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
606 <param name="channel_121_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
607 <param name="reference_channel" value="113"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
608 <param name="correction_matrix" value=""0.00/0.00/6.89/0.22" "0.00/0.94/5.90/0.16" "0.00/1.88/4.90/0.10" "0.00/2.82/3.90/0.07" "0.06/3.77/2.99/0.00" "0.09/4.71/1.88/0.00" "0.14/5.66/0.87/0.00" "0.27/7.44/0.18/0.00""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
609 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
610 <section name="quantification"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
611 <param name="isotope_correction" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
612 <param name="normalization" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
613 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
614 <section name="tmt10plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
615 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
616 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
617 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
618 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
619 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
620 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
621 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
622 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
623 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
624 <param name="channel_131_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
625 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
626 <param name="correction_matrix" value=""0.0/0.0/5.0/0.0" "0.0/0.2/4.6/0.0" "0.0/0.2/4.6/0.3" "0.0/0.9/4.7/0.2" "0.0/0.5/3.2/0.0" "0.0/0.7/3.3/0.0" "0.0/1.3/2.5/0.0" "0.0/1.2/2.8/2.7" "0.0/1.5/2.0/0.0" "0.0/1.5/1.9/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
627 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
628 <section name="tmt11plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
629 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
630 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
631 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
632 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
633 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
634 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
635 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
636 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
637 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
638 <param name="channel_131N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
639 <param name="channel_131C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
640 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
641 <param name="correction_matrix" value=""0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
642 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
643 <section name="tmt16plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
644 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
645 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
646 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
647 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
648 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
649 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
650 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
651 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
652 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
653 <param name="channel_131N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
654 <param name="channel_131C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
655 <param name="channel_132N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
656 <param name="channel_132C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
657 <param name="channel_133N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
658 <param name="channel_133C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
659 <param name="channel_134N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
660 <param name="reference_channel" value="126"/> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
661 <param name="correction_matrix" value=""NA/NA / NA/NA / 0.31/9.09 / 0.02/0.32" "NA/NA / NA/0.78 / NA/9.41 / NA/0.33" "NA/NA / 0.93/NA / 0.35/8.63 / 0.01/0.27" "NA/0.00 / 0.82/0.65 / NA/8.13 / NA/0.26" "0.00/NA / 1.47/NA / 0.34/6.91 / 0.00/0.15" "0.00/0.00 / 1.46/1.28 / NA/6.86 / NA/0.15" "0.13/NA / 2.59/NA / 0.32/6.07 / 0.1/0.09" "0.13/0.00 / 2.41/0.27 / NA/5.58 / NA/0.10" "0.04/NA / 3.10/NA / 0.42/4.82 / 0.02/0.06" "0.03/0.00 / 2.78/0.63 / NA/4.57 / NA/0.12" "0.08/NA / 3.90/NA / 0.47/3.57 / 0.00/0.04" "0.15/0.01 / 3.58/0.72 / NA/1.80 / NA/0.00" "0.11/NA / 4.55/NA / 0.43/1.86 / 0.00/0.00" "0.07/0.01 / 3.14/0.73 / NA/3.40 / NA/0.03" "0.22/NA / 4.96/NA / 0.34/1.03 / 0.00/NA" "0.30/0.03 / 5.49/0.62 / NA/1.14 / NA/NA""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
662 </section> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
663 <section name="tmt18plex"> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
664 <param name="channel_126_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
665 <param name="channel_127N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
666 <param name="channel_127C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
667 <param name="channel_128N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
668 <param name="channel_128C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
669 <param name="channel_129N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
670 <param name="channel_129C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
671 <param name="channel_130N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
672 <param name="channel_130C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
673 <param name="channel_131N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
674 <param name="channel_131C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
675 <param name="channel_132N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
676 <param name="channel_132C_description" value=""/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
677 <param name="channel_133N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
678 <param name="channel_133C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
679 <param name="channel_134N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
680 <param name="channel_134C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
681 <param name="channel_135N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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changeset
|
682 <param name="reference_channel" value="126"/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
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changeset
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683 <param name="correction_matrix" value=""NA/NA /NA/NA /0.31/9.09 /0.02/0.32" "NA/NA /NA/0.78 /NA/9.41 /NA/0.33" "NA/NA /0.93/NA /0.35/8.63 /0.01/0.27" "NA/0.00 /0.82/0.65 /NA/8.13 /NA/0.26" "0.00/NA /1.47/NA /0.34/6.91 /0.00/0.15" "0.00/0.00 /1.46/1.28 /NA/6.86 /NA/0.15" "0.13/NA /2.59/NA /0.32/6.07 /0.1/0.09" "0.13/0.00 /2.41/0.27 /NA/5.58 /NA/0.10" "0.04/NA /3.10/NA /0.42/4.82 /0.02/0.06" "0.03/0.00 /2.78/0.63 /NA/4.57 /NA/0.12" "0.08/NA /3.90/NA /0.47/3.57 /0.00/0.04" "0.15/0.01 /3.58/0.72 /NA/1.80 /NA/0.00" "0.11/NA /4.55/NA /0.43/1.86 /0.00/0.00" "0.07/0.01 /3.14/0.73 /NA/3.40 /NA/0.03" "0.22/NA /4.96/NA /0.34/1.03 /0.00/NA" "0.30/0.03 /5.49/0.62 /NA/1.14 /NA/NA" "0.14/NA /5.81/NA /0.31/NA /NA/NA" "0.19/0.02 /5.42/0.36 /NA/NA /NA/NA""/> |
|
13
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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changeset
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684 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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changeset
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685 <section name="tmt6plex"> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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changeset
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686 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
|
687 <param name="channel_127_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
|
688 <param name="channel_128_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
|
689 <param name="channel_129_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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690 <param name="channel_130_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
|
691 <param name="channel_131_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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692 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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693 <param name="correction_matrix" value=""0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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694 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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parents:
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695 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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parents:
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changeset
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696 <output name="ctd_out" ftype="xml"> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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changeset
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697 <assert_contents> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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698 <is_valid_xml/> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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699 </assert_contents> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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700 </output> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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701 <assert_stdout> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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702 <has_text_matching expression="@EXECUTABLE@ took .* \(wall\), .* \(CPU\), .* \(system\), .* \(user\)(; Peak Memory Usage: 32 MB)?."/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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703 </assert_stdout> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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704 </test> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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705 <!-- TOPP_IsobaricAnalyzer_TMTElevenPlexMethod_1 --> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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706 <test expect_num_outputs="2"> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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changeset
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707 <section name="adv_opts"> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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changeset
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708 <param name="force" value="false"/> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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709 <param name="test" value="true"/> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
|
710 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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711 <param name="type" value="itraq4plex"/> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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parents:
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changeset
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712 <param name="in" value="TMTTenPlexMethod_test.mzML"/> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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713 <output name="out" value="TMTElevenPlexMethod_test.consensusXML" compare="sim_size" delta_frac="0.7" ftype="consensusxml"/> |
|
13
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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changeset
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714 <section name="extraction"> |
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130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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changeset
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715 <param name="select_activation" value="auto"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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changeset
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716 <param name="reporter_mass_shift" value="0.002"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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717 <param name="min_precursor_intensity" value="1.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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718 <param name="keep_unannotated_precursor" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
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changeset
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719 <param name="min_reporter_intensity" value="0.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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720 <param name="discard_low_intensity_quantifications" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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721 <param name="min_precursor_purity" value="0.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
|
722 <param name="precursor_isotope_deviation" value="10.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
|
723 <param name="purity_interpolation" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
|
724 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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parents:
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changeset
|
725 <section name="itraq4plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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726 <param name="channel_114_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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727 <param name="channel_115_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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changeset
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728 <param name="channel_116_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
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parents:
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729 <param name="channel_117_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
730 <param name="reference_channel" value="114"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
731 <param name="correction_matrix" value=""0.0/1.0/5.9/0.2" "0.0/2.0/5.6/0.1" "0.0/3.0/4.5/0.1" "0.1/4.0/3.5/0.1""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
732 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
733 <section name="itraq8plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
734 <param name="channel_113_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
735 <param name="channel_114_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
736 <param name="channel_115_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
737 <param name="channel_116_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
738 <param name="channel_117_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
739 <param name="channel_118_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
740 <param name="channel_119_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
741 <param name="channel_121_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
742 <param name="reference_channel" value="113"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
743 <param name="correction_matrix" value=""0.00/0.00/6.89/0.22" "0.00/0.94/5.90/0.16" "0.00/1.88/4.90/0.10" "0.00/2.82/3.90/0.07" "0.06/3.77/2.99/0.00" "0.09/4.71/1.88/0.00" "0.14/5.66/0.87/0.00" "0.27/7.44/0.18/0.00""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
744 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
745 <section name="quantification"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
746 <param name="isotope_correction" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
747 <param name="normalization" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
748 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
749 <section name="tmt10plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
750 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
751 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
752 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
753 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
754 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
755 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
756 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
757 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
758 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
759 <param name="channel_131_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
760 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
761 <param name="correction_matrix" value=""0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
762 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
763 <section name="tmt11plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
764 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
765 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
766 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
767 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
768 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
769 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
770 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
771 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
772 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
773 <param name="channel_131N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
774 <param name="channel_131C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
775 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
776 <param name="correction_matrix" value=""0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
777 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
778 <section name="tmt16plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
779 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
780 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
781 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
782 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
783 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
784 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
785 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
786 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
787 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
788 <param name="channel_131N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
789 <param name="channel_131C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
790 <param name="channel_132N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
791 <param name="channel_132C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
792 <param name="channel_133N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
793 <param name="channel_133C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
794 <param name="channel_134N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
795 <param name="reference_channel" value="126"/> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
796 <param name="correction_matrix" value=""NA/NA / NA/NA / 0.31/9.09 / 0.02/0.32" "NA/NA / NA/0.78 / NA/9.41 / NA/0.33" "NA/NA / 0.93/NA / 0.35/8.63 / 0.01/0.27" "NA/0.00 / 0.82/0.65 / NA/8.13 / NA/0.26" "0.00/NA / 1.47/NA / 0.34/6.91 / 0.00/0.15" "0.00/0.00 / 1.46/1.28 / NA/6.86 / NA/0.15" "0.13/NA / 2.59/NA / 0.32/6.07 / 0.1/0.09" "0.13/0.00 / 2.41/0.27 / NA/5.58 / NA/0.10" "0.04/NA / 3.10/NA / 0.42/4.82 / 0.02/0.06" "0.03/0.00 / 2.78/0.63 / NA/4.57 / NA/0.12" "0.08/NA / 3.90/NA / 0.47/3.57 / 0.00/0.04" "0.15/0.01 / 3.58/0.72 / NA/1.80 / NA/0.00" "0.11/NA / 4.55/NA / 0.43/1.86 / 0.00/0.00" "0.07/0.01 / 3.14/0.73 / NA/3.40 / NA/0.03" "0.22/NA / 4.96/NA / 0.34/1.03 / 0.00/NA" "0.30/0.03 / 5.49/0.62 / NA/1.14 / NA/NA""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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|
797 </section> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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|
798 <section name="tmt18plex"> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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changeset
|
799 <param name="channel_126_description" value=""/> |
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30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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|
800 <param name="channel_127N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
801 <param name="channel_127C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
802 <param name="channel_128N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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parents:
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diff
changeset
|
803 <param name="channel_128C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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parents:
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diff
changeset
|
804 <param name="channel_129N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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parents:
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changeset
|
805 <param name="channel_129C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
806 <param name="channel_130N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
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parents:
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diff
changeset
|
807 <param name="channel_130C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
808 <param name="channel_131N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
809 <param name="channel_131C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
810 <param name="channel_132N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
811 <param name="channel_132C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
812 <param name="channel_133N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
813 <param name="channel_133C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
814 <param name="channel_134N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
815 <param name="channel_134C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
816 <param name="channel_135N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
817 <param name="reference_channel" value="126"/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
818 <param name="correction_matrix" value=""NA/NA /NA/NA /0.31/9.09 /0.02/0.32" "NA/NA /NA/0.78 /NA/9.41 /NA/0.33" "NA/NA /0.93/NA /0.35/8.63 /0.01/0.27" "NA/0.00 /0.82/0.65 /NA/8.13 /NA/0.26" "0.00/NA /1.47/NA /0.34/6.91 /0.00/0.15" "0.00/0.00 /1.46/1.28 /NA/6.86 /NA/0.15" "0.13/NA /2.59/NA /0.32/6.07 /0.1/0.09" "0.13/0.00 /2.41/0.27 /NA/5.58 /NA/0.10" "0.04/NA /3.10/NA /0.42/4.82 /0.02/0.06" "0.03/0.00 /2.78/0.63 /NA/4.57 /NA/0.12" "0.08/NA /3.90/NA /0.47/3.57 /0.00/0.04" "0.15/0.01 /3.58/0.72 /NA/1.80 /NA/0.00" "0.11/NA /4.55/NA /0.43/1.86 /0.00/0.00" "0.07/0.01 /3.14/0.73 /NA/3.40 /NA/0.03" "0.22/NA /4.96/NA /0.34/1.03 /0.00/NA" "0.30/0.03 /5.49/0.62 /NA/1.14 /NA/NA" "0.14/NA /5.81/NA /0.31/NA /NA/NA" "0.19/0.02 /5.42/0.36 /NA/NA /NA/NA""/> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
819 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
820 <section name="tmt6plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
821 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
822 <param name="channel_127_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
823 <param name="channel_128_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
824 <param name="channel_129_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
825 <param name="channel_130_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
826 <param name="channel_131_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
827 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
828 <param name="correction_matrix" value=""0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
829 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
830 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
831 <output name="ctd_out" ftype="xml"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
832 <assert_contents> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
833 <is_valid_xml/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
834 </assert_contents> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
835 </output> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
836 <assert_stdout> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
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|
837 <has_text_matching expression="@EXECUTABLE@ took .* \(wall\), .* \(CPU\), .* \(system\), .* \(user\)(; Peak Memory Usage: 32 MB)?."/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
838 </assert_stdout> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
839 </test> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
840 <!-- TOPP_IsobaricAnalyzer_MS3TMT10Plex_1 --> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
841 <test expect_num_outputs="2"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
842 <section name="adv_opts"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
843 <param name="force" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
844 <param name="test" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
845 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
846 <param name="type" value="tmt10plex"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
847 <param name="in" value="MS3_nonHierarchical.mzML"/> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
848 <output name="out" value="MS3TMT10Plex_test.consensusXML" compare="sim_size" delta_frac="0.7" ftype="consensusxml"/> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
849 <section name="extraction"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
850 <param name="select_activation" value="Collision-induced dissociation"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
851 <param name="reporter_mass_shift" value="0.002"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
852 <param name="min_precursor_intensity" value="1.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
853 <param name="keep_unannotated_precursor" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
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diff
changeset
|
854 <param name="min_reporter_intensity" value="0.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
855 <param name="discard_low_intensity_quantifications" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
856 <param name="min_precursor_purity" value="0.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
857 <param name="precursor_isotope_deviation" value="10.0"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
858 <param name="purity_interpolation" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
859 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
860 <section name="itraq4plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
861 <param name="channel_114_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
862 <param name="channel_115_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
863 <param name="channel_116_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
864 <param name="channel_117_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
865 <param name="reference_channel" value="114"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
866 <param name="correction_matrix" value=""0.0/1.0/5.9/0.2" "0.0/2.0/5.6/0.1" "0.0/3.0/4.5/0.1" "0.1/4.0/3.5/0.1""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
867 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
868 <section name="itraq8plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
869 <param name="channel_113_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
870 <param name="channel_114_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
871 <param name="channel_115_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
872 <param name="channel_116_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
873 <param name="channel_117_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
874 <param name="channel_118_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
875 <param name="channel_119_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
876 <param name="channel_121_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
877 <param name="reference_channel" value="113"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
878 <param name="correction_matrix" value=""0.00/0.00/6.89/0.22" "0.00/0.94/5.90/0.16" "0.00/1.88/4.90/0.10" "0.00/2.82/3.90/0.07" "0.06/3.77/2.99/0.00" "0.09/4.71/1.88/0.00" "0.14/5.66/0.87/0.00" "0.27/7.44/0.18/0.00""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
879 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
880 <section name="quantification"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
881 <param name="isotope_correction" value="true"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
882 <param name="normalization" value="false"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
883 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
884 <section name="tmt10plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
885 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
886 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
887 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
888 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
889 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
890 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
891 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
892 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
893 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
894 <param name="channel_131_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
895 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
896 <param name="correction_matrix" value=""0.0/0.0/5.09/0.0" "0.0/0.25/5.27/0.0" "0.0/0.37/5.36/0.15" "0.0/0.65/4.17/0.1" "0.08/0.49/3.06/0.0" "0.01/0.71/3.07/0.0" "0.0/1.32/2.62/0.0" "0.02/1.28/2.75/2.53" "0.03/2.08/2.23/0.0" "0.08/1.99/1.65/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
897 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
898 <section name="tmt11plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
899 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
900 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
901 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
902 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
903 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
904 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
905 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
906 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
907 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
908 <param name="channel_131N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
909 <param name="channel_131C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
910 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
911 <param name="correction_matrix" value=""0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
912 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
913 <section name="tmt16plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
914 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
915 <param name="channel_127N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
916 <param name="channel_127C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
917 <param name="channel_128N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
918 <param name="channel_128C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
919 <param name="channel_129N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
920 <param name="channel_129C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
921 <param name="channel_130N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
922 <param name="channel_130C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
923 <param name="channel_131N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
924 <param name="channel_131C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
925 <param name="channel_132N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
926 <param name="channel_132C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
927 <param name="channel_133N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
928 <param name="channel_133C_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
929 <param name="channel_134N_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
930 <param name="reference_channel" value="126"/> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
931 <param name="correction_matrix" value=""NA/NA / NA/NA / 0.31/9.09 / 0.02/0.32" "NA/NA / NA/0.78 / NA/9.41 / NA/0.33" "NA/NA / 0.93/NA / 0.35/8.63 / 0.01/0.27" "NA/0.00 / 0.82/0.65 / NA/8.13 / NA/0.26" "0.00/NA / 1.47/NA / 0.34/6.91 / 0.00/0.15" "0.00/0.00 / 1.46/1.28 / NA/6.86 / NA/0.15" "0.13/NA / 2.59/NA / 0.32/6.07 / 0.1/0.09" "0.13/0.00 / 2.41/0.27 / NA/5.58 / NA/0.10" "0.04/NA / 3.10/NA / 0.42/4.82 / 0.02/0.06" "0.03/0.00 / 2.78/0.63 / NA/4.57 / NA/0.12" "0.08/NA / 3.90/NA / 0.47/3.57 / 0.00/0.04" "0.15/0.01 / 3.58/0.72 / NA/1.80 / NA/0.00" "0.11/NA / 4.55/NA / 0.43/1.86 / 0.00/0.00" "0.07/0.01 / 3.14/0.73 / NA/3.40 / NA/0.03" "0.22/NA / 4.96/NA / 0.34/1.03 / 0.00/NA" "0.30/0.03 / 5.49/0.62 / NA/1.14 / NA/NA""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
932 </section> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
933 <section name="tmt18plex"> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
934 <param name="channel_126_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
935 <param name="channel_127N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
936 <param name="channel_127C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
937 <param name="channel_128N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
938 <param name="channel_128C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
939 <param name="channel_129N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
940 <param name="channel_129C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
941 <param name="channel_130N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
942 <param name="channel_130C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
943 <param name="channel_131N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
944 <param name="channel_131C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
945 <param name="channel_132N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
946 <param name="channel_132C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
947 <param name="channel_133N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
948 <param name="channel_133C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
949 <param name="channel_134N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
950 <param name="channel_134C_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
951 <param name="channel_135N_description" value=""/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
952 <param name="reference_channel" value="126"/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
953 <param name="correction_matrix" value=""NA/NA /NA/NA /0.31/9.09 /0.02/0.32" "NA/NA /NA/0.78 /NA/9.41 /NA/0.33" "NA/NA /0.93/NA /0.35/8.63 /0.01/0.27" "NA/0.00 /0.82/0.65 /NA/8.13 /NA/0.26" "0.00/NA /1.47/NA /0.34/6.91 /0.00/0.15" "0.00/0.00 /1.46/1.28 /NA/6.86 /NA/0.15" "0.13/NA /2.59/NA /0.32/6.07 /0.1/0.09" "0.13/0.00 /2.41/0.27 /NA/5.58 /NA/0.10" "0.04/NA /3.10/NA /0.42/4.82 /0.02/0.06" "0.03/0.00 /2.78/0.63 /NA/4.57 /NA/0.12" "0.08/NA /3.90/NA /0.47/3.57 /0.00/0.04" "0.15/0.01 /3.58/0.72 /NA/1.80 /NA/0.00" "0.11/NA /4.55/NA /0.43/1.86 /0.00/0.00" "0.07/0.01 /3.14/0.73 /NA/3.40 /NA/0.03" "0.22/NA /4.96/NA /0.34/1.03 /0.00/NA" "0.30/0.03 /5.49/0.62 /NA/1.14 /NA/NA" "0.14/NA /5.81/NA /0.31/NA /NA/NA" "0.19/0.02 /5.42/0.36 /NA/NA /NA/NA""/> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
954 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
955 <section name="tmt6plex"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
956 <param name="channel_126_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
957 <param name="channel_127_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
958 <param name="channel_128_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
959 <param name="channel_129_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
960 <param name="channel_130_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
961 <param name="channel_131_description" value=""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
962 <param name="reference_channel" value="126"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
963 <param name="correction_matrix" value=""0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0" "0.0/0.0/0.0/0.0""/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
964 </section> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
965 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
966 <output name="ctd_out" ftype="xml"> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
967 <assert_contents> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
968 <is_valid_xml/> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
969 </assert_contents> |
|
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
970 </output> |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
971 <assert_stdout> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
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|
972 <has_text_matching expression="@EXECUTABLE@ took .* \(wall\), .* \(CPU\), .* \(system\), .* \(user\)(; Peak Memory Usage: 32 MB)?."/> |
|
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
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diff
changeset
|
973 </assert_stdout> |
|
13
130ffca1ec5b
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
galaxyp
parents:
11
diff
changeset
|
974 </test> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
7
diff
changeset
|
975 </tests> |
|
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
7
diff
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|
976 <help><![CDATA[Calculates isobaric quantitative values for peptides |
|
0
916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
parents:
diff
changeset
|
977 |
|
916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
parents:
diff
changeset
|
978 |
|
14
30f67afbf5be
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
galaxyp
parents:
13
diff
changeset
|
979 For more information, visit https://openms.de/doxygen/release/3.1.0/html/TOPP_IsobaricAnalyzer.html]]></help> |
|
9
d52e76ea2c11
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
7
diff
changeset
|
980 <expand macro="references"/> |
|
0
916f41a35640
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
galaxyp
parents:
diff
changeset
|
981 </tool> |