Mercurial > repos > galaxyp > openms_mapalignerspectrum

comparison MapAlignerSpectrum.xml @ 2:3ba382706e89 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:41:08 -0400
parents 788f648028e0
children b5b03aacbfd9
comparison
equal deleted inserted replaced
1:8751db99e4bb 2:3ba382706e89
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>MapAlignerSpectrum 13 <command detect_errors="aggressive"><![CDATA[MapAlignerSpectrum
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
136 #end if 136 #end if
137 #if $adv_opts.param_algorithm_mismatchscore: 137 #if $adv_opts.param_algorithm_mismatchscore:
138 -algorithm:mismatchscore $adv_opts.param_algorithm_mismatchscore 138 -algorithm:mismatchscore $adv_opts.param_algorithm_mismatchscore
139 #end if 139 #end if
140 #end if 140 #end if
141 </command> 141 ]]></command>
142 <inputs> 142 <inputs>
143 <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input files to align (all must have the same file type)" help="(-in) "> 143 <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input files to align (all must have the same file type)" help="(-in) ">
144 <sanitizer> 144 <sanitizer>
145 <valid initial="string.printable"> 145 <valid initial="string.printable">
146 <remove value="'"/> 146 <remove value="'"/>
206 <data name="param_trafo_out" format="trafoxml"/> 206 <data name="param_trafo_out" format="trafoxml"/>
207 </outputs> 207 </outputs>
208 <help>Corrects retention time distortions between maps by spectrum alignment. 208 <help>Corrects retention time distortions between maps by spectrum alignment.
209 209
210 210
211 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MapAlignerSpectrum.html</help> 211 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MapAlignerSpectrum.html</help>
212 </tool> 212 </tool>