Mercurial > repos > galaxyp > openms_metabolitespectralmatcher

comparison MetaboliteSpectralMatcher.xml @ 7:867d97b37983 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:14:23 -0400
parents 5df50037ba1f
children 7b5df538705e
comparison
equal deleted inserted replaced
6:399fae38a523 7:867d97b37983
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>MetaboliteSpectralMatcher 13 <command detect_errors="aggressive"><![CDATA[MetaboliteSpectralMatcher
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_database: 18 #if $param_database:
54 #if $adv_opts.adv_opts_selector=='advanced': 54 #if $adv_opts.adv_opts_selector=='advanced':
55 #if $adv_opts.param_force: 55 #if $adv_opts.param_force:
56 -force 56 -force
57 #end if 57 #end if
58 #end if 58 #end if
59 </command> 59 ]]></command>
60 <inputs> 60 <inputs>
61 <param name="param_in" type="data" format="mzml" optional="False" label="Input spectra" help="(-in) "/> 61 <param name="param_in" type="data" format="mzml" optional="False" label="Input spectra" help="(-in) "/>
62 <param name="param_database" type="data" format="mzml" optional="True" value="CHEMISTRY/MetaboliteSpectralDB.mzML" label="Default spectral database" help="(-database) "/> 62 <param name="param_database" type="data" format="mzml" optional="True" value="CHEMISTRY/MetaboliteSpectralDB.mzML" label="Default spectral database" help="(-database) "/>
63 <param name="param_algorithm_prec_mass_error_value" type="float" value="100.0" label="Error allowed for precursor ion mass" help="(-prec_mass_error_value) "/> 63 <param name="param_algorithm_prec_mass_error_value" type="float" value="100.0" label="Error allowed for precursor ion mass" help="(-prec_mass_error_value) "/>
64 <param name="param_algorithm_frag_mass_error_value" type="float" value="500.0" label="Error allowed for product ions" help="(-frag_mass_error_value) "/> 64 <param name="param_algorithm_frag_mass_error_value" type="float" value="500.0" label="Error allowed for product ions" help="(-frag_mass_error_value) "/>
82 <data name="param_out" format="tabular"/> 82 <data name="param_out" format="tabular"/>
83 </outputs> 83 </outputs>
84 <help>Perform a spectral library search. 84 <help>Perform a spectral library search.
85 85
86 86
87 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_MetaboliteSpectralMatcher.html</help> 87 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_MetaboliteSpectralMatcher.html</help>
88 </tool> 88 </tool>