Mercurial > repos > galaxyp > openms_metabolitespectralmatcher

diff MetaboliteSpectralMatcher.xml @ 7:867d97b37983 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:14:23 -0400
parents 5df50037ba1f
children 7b5df538705e
line wrap: on
line diff
--- a/MetaboliteSpectralMatcher.xml	Tue Mar 20 14:45:32 2018 -0400
+++ b/MetaboliteSpectralMatcher.xml	Wed May 15 08:14:23 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>MetaboliteSpectralMatcher
+  <command detect_errors="aggressive"><![CDATA[MetaboliteSpectralMatcher
 
 #if $param_in:
   -in $param_in
@@ -56,7 +56,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="Input spectra" help="(-in) "/>
     <param name="param_database" type="data" format="mzml" optional="True" value="CHEMISTRY/MetaboliteSpectralDB.mzML" label="Default spectral database" help="(-database) "/>
@@ -84,5 +84,5 @@
   <help>Perform a spectral library search.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_MetaboliteSpectralMatcher.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_MetaboliteSpectralMatcher.html</help>
 </tool>