Mercurial > repos > galaxyp > openms_mztabexporter

annotate 404-urls.patch @ 10:c679f920716e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
author galaxyp
date Thu, 24 Sep 2020 12:19:26 +0000
parents
children 9bf4fbcf20c8
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
10
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
1 diff -ruN ClusterMassTracesByPrecursor.xml ClusterMassTracesByPrecursor.xml
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
2 --- ClusterMassTracesByPrecursor.xml 2020-09-21 17:02:36.060104555 +0200
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
3 +++ ClusterMassTracesByPrecursor.xml 2020-09-21 17:00:02.864815223 +0200
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
4 @@ -75,8 +75,6 @@
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
5 <expand macro="manutest_ClusterMassTracesByPrecursor"/>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
6 </tests>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
7 <help><![CDATA[Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile.
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
8 -
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
9 -
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
10 -For more information, visit http://www.openms.de/documentation/UTILS_ClusterMassTracesByPrecursor.html]]></help>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
11 +]]></help>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
12 <expand macro="references"/>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
13 </tool>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
14 diff -ruN ClusterMassTraces.xml ClusterMassTraces.xml
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
15 --- ClusterMassTraces.xml 2020-09-21 17:02:36.060104555 +0200
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
16 +++ ClusterMassTraces.xml 2020-09-21 17:00:22.192722036 +0200
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
17 @@ -69,8 +69,6 @@
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
18 <expand macro="manutest_ClusterMassTraces"/>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
19 </tests>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
20 <help><![CDATA[Creates pseudo spectra.
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
21 -
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
22 -
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
23 -For more information, visit http://www.openms.de/documentation/UTILS_ClusterMassTraces.html]]></help>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
24 +]]></help>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
25 <expand macro="references"/>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
26 </tool>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
27 diff -ruN FeatureFinderSuperHirn.xml FeatureFinderSuperHirn.xml
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
28 --- FeatureFinderSuperHirn.xml 2020-09-21 17:02:36.060104555 +0200
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
29 +++ FeatureFinderSuperHirn.xml 2020-09-21 17:00:42.372625907 +0200
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
30 @@ -103,8 +103,6 @@
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
31 <expand macro="manutest_FeatureFinderSuperHirn"/>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
32 </tests>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
33 <help><![CDATA[Finds mass spectrometric features in mass spectra.
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
34 -
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
35 -
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
36 -For more information, visit http://www.openms.de/documentation/TOPP_FeatureFinderSuperHirn.html]]></help>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
37 +]]></help>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
38 <expand macro="references"/>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
39 </tool>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
40 diff -ruN MSFraggerAdapter.xml MSFraggerAdapter.xml
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
41 --- MSFraggerAdapter.xml 2020-09-21 17:02:36.060104555 +0200
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
42 +++ MSFraggerAdapter.xml 2020-09-21 17:01:04.892519985 +0200
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
43 @@ -250,8 +250,6 @@
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
44 <expand macro="manutest_MSFraggerAdapter"/>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
45 </tests>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
46 <help><![CDATA[Peptide Identification with MSFragger
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
47 -
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
48 -
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
49 -For more information, visit http://www.openms.de/documentation/UTILS_MSFraggerAdapter.html]]></help>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
50 +]]></help>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
51 <expand macro="references"/>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
52 </tool>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
53 diff -ruN SimpleSearchEngine.xml SimpleSearchEngine.xml
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
54 --- SimpleSearchEngine.xml 2020-09-21 17:02:36.060104555 +0200
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
55 +++ SimpleSearchEngine.xml 2020-09-21 17:01:33.020389600 +0200
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
56 @@ -5373,8 +5373,6 @@
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
57 <expand macro="manutest_SimpleSearchEngine"/>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
58 </tests>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
59 <help><![CDATA[Annotates MS/MS spectra using SimpleSearchEngine.
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
60 -
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
61 -
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
62 -For more information, visit http://www.openms.de/documentation/UTILS_SimpleSearchEngine.html]]></help>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
63 +]]></help>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
64 <expand macro="references"/>
c679f920716e "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
galaxyp
parents:
diff changeset
65 </tool>