Mercurial > repos > galaxyp > openms_openswathfilesplitter

diff OpenSwathFileSplitter.xml @ 0:8ddc26f9e2a5 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 12:38:42 -0500
parents
children 83f73d0386e0
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/OpenSwathFileSplitter.xml	Wed Mar 01 12:38:42 2017 -0500
@@ -0,0 +1,57 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--Proposed Tool Section: []-->
+<tool id="OpenSwathFileSplitter" name="OpenSwathFileSplitter" version="2.1.0">
+  <description>Splits SWATH files into n files, each containing one window.</description>
+  <macros>
+    <token name="@EXECUTABLE@">OpenSwathFileSplitter</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="references"/>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>OpenSwathFileSplitter
+
+-in
+  #for token in $param_in:
+    $token
+  #end for
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_outputDirectory:
+  -outputDirectory     "$adv_opts.param_outputDirectory"
+#end if
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
+&gt; $param_stdout
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mzxml,mzml" multiple="true" optional="False" size="30" label="Input file (SWATH/DIA file)" help="(-in) ">
+      <sanitizer>
+        <valid initial="string.printable">
+          <remove value="'"/>
+          <remove value="&quot;"/>
+        </valid>
+      </sanitizer>
+    </param>
+    <expand macro="advanced_options">
+      <param name="param_outputDirectory" type="text" size="30" value="./" label="Output path to store the split files" help="(-outputDirectory) ">
+        <sanitizer>
+          <valid initial="string.printable">
+            <remove value="'"/>
+            <remove value="&quot;"/>
+          </valid>
+        </sanitizer>
+      </param>
+      <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_stdout" format="text" label="Output from stdout"/>
+  </outputs>
+  <help>Splits SWATH files into n files, each containing one window.
+
+
+For more information, visit </help>
+</tool>