Mercurial > repos > galaxyp > openms_openswathfilesplitter

annotate OpenSwathFileSplitter.xml @ 0:8ddc26f9e2a5 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 12:38:42 -0500
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8ddc26f9e2a5 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: []-->
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4 <tool id="OpenSwathFileSplitter" name="OpenSwathFileSplitter" version="2.1.0">
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5 <description>Splits SWATH files into n files, each containing one window.</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">OpenSwathFileSplitter</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>OpenSwathFileSplitter
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14
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15 -in
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16 #for token in $param_in:
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17 $token
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18 #end for
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19 #if $adv_opts.adv_opts_selector=='advanced':
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20 #if $adv_opts.param_outputDirectory:
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21 -outputDirectory "$adv_opts.param_outputDirectory"
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22 #end if
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23 #if $adv_opts.param_force:
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24 -force
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25 #end if
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26 #end if
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27 &gt; $param_stdout
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28 </command>
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29 <inputs>
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30 <param name="param_in" type="data" format="mzxml,mzml" multiple="true" optional="False" size="30" label="Input file (SWATH/DIA file)" help="(-in) ">
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31 <sanitizer>
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32 <valid initial="string.printable">
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33 <remove value="'"/>
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34 <remove value="&quot;"/>
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35 </valid>
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36 </sanitizer>
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37 </param>
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38 <expand macro="advanced_options">
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39 <param name="param_outputDirectory" type="text" size="30" value="./" label="Output path to store the split files" help="(-outputDirectory) ">
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40 <sanitizer>
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41 <valid initial="string.printable">
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42 <remove value="'"/>
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43 <remove value="&quot;"/>
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44 </valid>
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45 </sanitizer>
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46 </param>
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47 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
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48 </expand>
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49 </inputs>
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50 <outputs>
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51 <data name="param_stdout" format="text" label="Output from stdout"/>
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52 </outputs>
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53 <help>Splits SWATH files into n files, each containing one window.
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54
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55
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56 For more information, visit </help>
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57 </tool>