Mercurial > repos > galaxyp > openms_openswathmzmlfilecacher

comparison OpenSwathMzMLFileCacher.xml @ 7:b5121b003599 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:09:48 -0400
parents e1c2ee148254
children e7c43d17e3dc
comparison
equal deleted inserted replaced
6:691ae855ba41 7:b5121b003599
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>OpenSwathMzMLFileCacher 13 <command detect_errors="aggressive"><![CDATA[OpenSwathMzMLFileCacher
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
32 #if $adv_opts.adv_opts_selector=='advanced': 32 #if $adv_opts.adv_opts_selector=='advanced':
33 #if $adv_opts.param_force: 33 #if $adv_opts.param_force:
34 -force 34 -force
35 #end if 35 #end if
36 #end if 36 #end if
37 </command> 37 ]]></command>
38 <inputs> 38 <inputs>
39 <param name="param_in" type="data" format="mzml,sqMass" optional="False" label="Input mzML file" help="(-in) "/> 39 <param name="param_in" type="data" format="mzml,sqMass" optional="False" label="Input mzML file" help="(-in) "/>
40 <param name="param_out_type" display="radio" type="select" optional="True" label="Output file type -- default: determined from file extension or content &lt;br&gt;Note: that not all conversion paths work or make sense" help="(-out_type) "> 40 <param name="param_out_type" display="radio" type="select" optional="True" label="Output file type -- default: determined from file extension or content &lt;br&gt;Note: that not all conversion paths work or make sense" help="(-out_type) ">
41 <option value="mzML">mzML</option> 41 <option value="mzML">mzML</option>
42 <option value="sqMass">sqMass</option> 42 <option value="sqMass">sqMass</option>
50 <data name="param_out" format="mzml"/> 50 <data name="param_out" format="mzml"/>
51 </outputs> 51 </outputs>
52 <help>This tool caches the spectra and chromatogram data of an mzML to disk. 52 <help>This tool caches the spectra and chromatogram data of an mzML to disk.
53 53
54 54
55 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_OpenSwathMzMLFileCacher.html</help> 55 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenSwathMzMLFileCacher.html</help>
56 </tool> 56 </tool>