Mercurial > repos > galaxyp > openms_rnadigestor

diff RNADigestor.xml @ 2:88969677ae51 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:43:02 +0000
parents 3e7d3f64392b
children c951784e4967
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--- a/RNADigestor.xml	Thu Sep 24 08:59:36 2020 +0000
+++ b/RNADigestor.xml	Tue Oct 13 19:43:02 2020 +0000
@@ -47,24 +47,24 @@
     <param name="max_length" argument="-max_length" type="integer" optional="true" value="30" label="Maximum length of a fragment" help=""/>
     <param name="enzyme" argument="-enzyme" type="select" optional="false" label="Digestion enzyme (RNase)" help="">
       <option value="RNase_T1" selected="true">RNase_T1</option>
-      <option value="RNase_MC1">RNase_MC1</option>
       <option value="RNase_H">RNase_H</option>
       <option value="no cleavage">no cleavage</option>
       <option value="unspecific cleavage">unspecific cleavage</option>
       <option value="cusativin">cusativin</option>
       <option value="RNase_U2">RNase_U2</option>
       <option value="RNase_A">RNase_A</option>
+      <option value="RNase_MC1">RNase_MC1</option>
       <expand macro="list_string_san"/>
     </param>
     <param name="unique" argument="-unique" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Report each unique sequence fragment only once" help=""/>
     <param name="cdna" argument="-cdna" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Input file contains cDNA sequences - replace 'T' with 'U')" help=""/>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -81,6 +81,6 @@
   <help><![CDATA[Digests an RNA sequence database in-silico.
 
 
-For more information, visit http://www.openms.de/documentation/UTILS_RNADigestor.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_RNADigestor.html]]></help>
   <expand macro="references"/>
 </tool>