Mercurial > repos > galaxyp > openms_rnpxlsearch

comparison RNPxlSearch.xml @ 6:2e5df305c372 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:20:50 -0400
parents 3822d4b3c74d
children 7911914e96f6
comparison
equal deleted inserted replaced
5:85d212da1e00 6:2e5df305c372
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>RNPxlSearch 13 <command detect_errors="aggressive"><![CDATA[RNPxlSearch
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_database: 18 #if $param_database:
187 #end if 187 #end if
188 #if $adv_opts.param_RNPxl_marker_ions_tolerance: 188 #if $adv_opts.param_RNPxl_marker_ions_tolerance:
189 -RNPxl:marker_ions_tolerance $adv_opts.param_RNPxl_marker_ions_tolerance 189 -RNPxl:marker_ions_tolerance $adv_opts.param_RNPxl_marker_ions_tolerance
190 #end if 190 #end if
191 #end if 191 #end if
192 </command> 192 ]]></command>
193 <inputs> 193 <inputs>
194 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> 194 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
195 <param name="param_database" type="data" format="fasta" optional="False" label="input file" help="(-database) "/> 195 <param name="param_database" type="data" format="fasta" optional="False" label="input file" help="(-database) "/>
196 <param name="param_precursor_mass_tolerance" type="float" value="10.0" label="Precursor mass tolerance (+/- around precursor m/z)" help="(-mass_tolerance) "/> 196 <param name="param_precursor_mass_tolerance" type="float" value="10.0" label="Precursor mass tolerance (+/- around precursor m/z)" help="(-mass_tolerance) "/>
197 <param name="param_precursor_mass_tolerance_unit" display="radio" type="select" optional="False" value="ppm" label="Unit of precursor mass tolerance" help="(-mass_tolerance_unit) "> 197 <param name="param_precursor_mass_tolerance_unit" display="radio" type="select" optional="False" value="ppm" label="Unit of precursor mass tolerance" help="(-mass_tolerance_unit) ">
5384 <outputs> 5384 <outputs>
5385 <data name="param_out" format="idxml"/> 5385 <data name="param_out" format="idxml"/>
5386 <data name="param_out_tsv" format="tabular"/> 5386 <data name="param_out_tsv" format="tabular"/>
5387 </outputs> 5387 </outputs>
5388 <help>Annotate RNA to peptide crosslinks in MS/MS spectra. 5388 <help>Annotate RNA to peptide crosslinks in MS/MS spectra.
5389 5389 </help>
5390
5391 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_RNPxlSearch.html</help>
5392 </tool> 5390 </tool>