Mercurial > repos > galaxyp > openms_rnpxlsearch

diff RNPxlSearch.xml @ 6:2e5df305c372 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:20:50 -0400
parents 3822d4b3c74d
children 7911914e96f6
line wrap: on
line diff
--- a/RNPxlSearch.xml	Tue Mar 20 15:22:45 2018 -0400
+++ b/RNPxlSearch.xml	Fri May 17 10:20:50 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>RNPxlSearch
+  <command detect_errors="aggressive"><![CDATA[RNPxlSearch
 
 #if $param_in:
   -in $param_in
@@ -189,7 +189,7 @@
   -RNPxl:marker_ions_tolerance $adv_opts.param_RNPxl_marker_ions_tolerance
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
     <param name="param_database" type="data" format="fasta" optional="False" label="input file" help="(-database) "/>
@@ -5386,7 +5386,5 @@
     <data name="param_out_tsv" format="tabular"/>
   </outputs>
   <help>Annotate RNA to peptide crosslinks in MS/MS spectra.
-
-
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_RNPxlSearch.html</help>
+  </help>
 </tool>