Mercurial > repos > galaxyp > openms_rtmodel

comparison RTModel.xml @ 10:654e2bf18e82 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:15:37 +0000
parents a9ece00a3e54
children 0fc4aa40badb
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9:de3eec8c9a17 10:654e2bf18e82
131 <param name="sigma_start" argument="-cv:sigma_start" type="float" optional="true" value="1.0" label="starting point of sigma" help=""/> 131 <param name="sigma_start" argument="-cv:sigma_start" type="float" optional="true" value="1.0" label="starting point of sigma" help=""/>
132 <param name="sigma_step_size" argument="-cv:sigma_step_size" type="float" optional="true" value="1.3" label="step size of sigma" help=""/> 132 <param name="sigma_step_size" argument="-cv:sigma_step_size" type="float" optional="true" value="1.3" label="step size of sigma" help=""/>
133 <param name="sigma_stop" argument="-cv:sigma_stop" type="float" optional="true" value="15.0" label="stopping point of sigma" help=""/> 133 <param name="sigma_stop" argument="-cv:sigma_stop" type="float" optional="true" value="15.0" label="stopping point of sigma" help=""/>
134 </section> 134 </section>
135 <expand macro="adv_opts_macro"> 135 <expand macro="adv_opts_macro">
136 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 136 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
137 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 137 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
138 <expand macro="list_string_san"/> 138 <expand macro="list_string_san"/>
139 </param> 139 </param>
140 </expand> 140 </expand>
141 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 141 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
142 <option value="out_oligo_params_FLAG">out_oligo_params (stopping point of sigma)</option> 142 <option value="out_oligo_params_FLAG">out_oligo_params (output file with additional model parameters when using the OLIGO kernel)</option>
143 <option value="out_oligo_trainset_FLAG">out_oligo_trainset (stopping point of sigma)</option> 143 <option value="out_oligo_trainset_FLAG">out_oligo_trainset (output file with the used training dataset when using the OLIGO kernel)</option>
144 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 144 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
145 </param> 145 </param>
146 </inputs> 146 </inputs>
147 <outputs> 147 <outputs>
148 <data name="out" label="${tool.name} on ${on_string}: out" format="txt"/> 148 <data name="out" label="${tool.name} on ${on_string}: out" format="txt"/>
161 <expand macro="manutest_RTModel"/> 161 <expand macro="manutest_RTModel"/>
162 </tests> 162 </tests>
163 <help><![CDATA[Trains a model for the retention time prediction of peptides from a training set. 163 <help><![CDATA[Trains a model for the retention time prediction of peptides from a training set.
164 164
165 165
166 For more information, visit http://www.openms.de/documentation/TOPP_RTModel.html]]></help> 166 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_RTModel.html]]></help>
167 <expand macro="references"/> 167 <expand macro="references"/>
168 </tool> 168 </tool>