Mercurial > repos > galaxyp > openms_rtmodel

diff RTModel.xml @ 10:654e2bf18e82 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:15:37 +0000
parents a9ece00a3e54
children 0fc4aa40badb
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line diff
--- a/RTModel.xml	Thu Sep 24 12:28:30 2020 +0000
+++ b/RTModel.xml	Tue Oct 13 20:15:37 2020 +0000
@@ -133,14 +133,14 @@
       <param name="sigma_stop" argument="-cv:sigma_stop" type="float" optional="true" value="15.0" label="stopping point of sigma" help=""/>
     </section>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
-      <option value="out_oligo_params_FLAG">out_oligo_params (stopping point of sigma)</option>
-      <option value="out_oligo_trainset_FLAG">out_oligo_trainset (stopping point of sigma)</option>
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
+      <option value="out_oligo_params_FLAG">out_oligo_params (output file with additional model parameters when using the OLIGO kernel)</option>
+      <option value="out_oligo_trainset_FLAG">out_oligo_trainset (output file with the used training dataset when using the OLIGO kernel)</option>
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -163,6 +163,6 @@
   <help><![CDATA[Trains a model for the retention time prediction of peptides from a training set.
 
 
-For more information, visit http://www.openms.de/documentation/TOPP_RTModel.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_RTModel.html]]></help>
   <expand macro="references"/>
 </tool>