Mercurial > repos > galaxyp > openms_seedlistgenerator

comparison SeedListGenerator.xml @ 2:b7c51c9a8fa2 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:25:48 -0400
parents c82757bc39d7
children bff2e0548994
comparison
equal deleted inserted replaced
1:3b0ed400b387 2:b7c51c9a8fa2
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>SeedListGenerator 13 <command detect_errors="aggressive"><![CDATA[SeedListGenerator
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 18
32 #if $adv_opts.adv_opts_selector=='advanced': 32 #if $adv_opts.adv_opts_selector=='advanced':
33 #if $adv_opts.param_force: 33 #if $adv_opts.param_force:
34 -force 34 -force
35 #end if 35 #end if
36 #end if 36 #end if
37 </command> 37 ]]></command>
38 <inputs> 38 <inputs>
39 <param name="param_in" type="data" format="mzml,idxml,featurexml,consensusxml" optional="False" label="Input file (see below for details)" help="(-in) "/> 39 <param name="param_in" type="data" format="mzml,idxml,featurexml,consensusxml" optional="False" label="Input file (see below for details)" help="(-in) "/>
40 <param name="param_use_peptide_mass" display="radio" type="boolean" truevalue="-use_peptide_mass" falsevalue="" checked="false" optional="True" label="[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)" help="(-use_peptide_mass) "/> 40 <param name="param_use_peptide_mass" display="radio" type="boolean" truevalue="-use_peptide_mass" falsevalue="" checked="false" optional="True" label="[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)" help="(-use_peptide_mass) "/>
41 <expand macro="advanced_options"> 41 <expand macro="advanced_options">
42 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> 42 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
46 <data name="param_out" format="featurexml"/> 46 <data name="param_out" format="featurexml"/>
47 </outputs> 47 </outputs>
48 <help>Generates seed lists for feature detection. 48 <help>Generates seed lists for feature detection.
49 49
50 50
51 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SeedListGenerator.html</help> 51 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SeedListGenerator.html</help>
52 </tool> 52 </tool>