Mercurial > repos > galaxyp > openms_seedlistgenerator

diff SeedListGenerator.xml @ 2:b7c51c9a8fa2 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:25:48 -0400
parents c82757bc39d7
children bff2e0548994
line wrap: on
line diff
--- a/SeedListGenerator.xml	Tue Mar 20 15:27:59 2018 -0400
+++ b/SeedListGenerator.xml	Fri May 17 10:25:48 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>SeedListGenerator
+  <command detect_errors="aggressive"><![CDATA[SeedListGenerator
 
 #if $param_in:
   -in $param_in
@@ -34,7 +34,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml,idxml,featurexml,consensusxml" optional="False" label="Input file (see below for details)" help="(-in) "/>
     <param name="param_use_peptide_mass" display="radio" type="boolean" truevalue="-use_peptide_mass" falsevalue="" checked="false" optional="True" label="[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)" help="(-use_peptide_mass) "/>
@@ -48,5 +48,5 @@
   <help>Generates seed lists for feature detection.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SeedListGenerator.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SeedListGenerator.html</help>
 </tool>