Mercurial > repos > galaxyp > openms_sequencecoveragecalculator

comparison SequenceCoverageCalculator.xml @ 11:7cfb36b97c87 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:12:40 +0000
parents 01e5bd3ad317
children 3fe59b1a1370
comparison
equal deleted inserted replaced
10:47ad03766bd8 11:7cfb36b97c87
46 </configfiles> 46 </configfiles>
47 <inputs> 47 <inputs>
48 <param name="in_database" argument="-in_database" type="data" format="fasta" optional="false" label="input file containing the database in FASTA format" help=" select fasta data sets(s)"/> 48 <param name="in_database" argument="-in_database" type="data" format="fasta" optional="false" label="input file containing the database in FASTA format" help=" select fasta data sets(s)"/>
49 <param name="in_peptides" argument="-in_peptides" type="data" format="idxml" optional="false" label="input file containing the identified peptides" help=" select idxml data sets(s)"/> 49 <param name="in_peptides" argument="-in_peptides" type="data" format="idxml" optional="false" label="input file containing the identified peptides" help=" select idxml data sets(s)"/>
50 <expand macro="adv_opts_macro"> 50 <expand macro="adv_opts_macro">
51 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 51 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
52 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 52 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
53 <expand macro="list_string_san"/> 53 <expand macro="list_string_san"/>
54 </param> 54 </param>
55 </expand> 55 </expand>
56 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 56 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
57 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 57 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
58 </param> 58 </param>
59 </inputs> 59 </inputs>
60 <outputs> 60 <outputs>
61 <data name="out" label="${tool.name} on ${on_string}: out" format="txt"/> 61 <data name="out" label="${tool.name} on ${on_string}: out" format="txt"/>
68 <expand macro="manutest_SequenceCoverageCalculator"/> 68 <expand macro="manutest_SequenceCoverageCalculator"/>
69 </tests> 69 </tests>
70 <help><![CDATA[Prints information about idXML files. 70 <help><![CDATA[Prints information about idXML files.
71 71
72 72
73 For more information, visit http://www.openms.de/documentation/UTILS_SequenceCoverageCalculator.html]]></help> 73 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_SequenceCoverageCalculator.html]]></help>
74 <expand macro="references"/> 74 <expand macro="references"/>
75 </tool> 75 </tool>