Mercurial > repos > galaxyp > openms_simplesearchengine

annotate tool-data/pepnovo_models.loc.sample @ 9:e42e8b553f7d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
author galaxyp
date Wed, 09 Sep 2020 20:01:43 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
9
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
1 # This is a sample file distributed with Galaxy that enables tools
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
2 # to use pepnovo models
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
3 # The file has three tab separated columns: name, value, and path.
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
4 # The idea is that there are a number of models in a directory:
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
5 # - each model directory has a unique name (columns 2 and 0)
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
6 # - each model can contain a set of models (column 1)
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
7 #
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
8 # The following example works fo the default models from
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
9 # http://proteomics.ucsd.edu/Software/PepNovo.html (just remove the comment
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
10 # chars and replace DIR_TO_PEPNOVO_MODELS)
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
11
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
12 #default_models CID_IT_TRYP DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
13 #default_models LTQ_COMP DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
14 #default_models DBC4_PEAK DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
15 #default_models CID_IT_TRYP_TAG5 DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
16 #default_models CID_IT_TRYP_TAG6 DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
17 #default_models ITDNV_PEAK DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
18 #default_models CID_IT_TRYP_SCORE DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
19 #default_models CID_IT_TRYP_TAG3 DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
20 #default_models CID_IT_TRYP_DNVPART DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
21 #default_models CID_IT_TRYP_TAG4 DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
22 #default_models CID_IT_TRYP_DB DIR_TO_PEPNOVO_MODELS
e42e8b553f7d "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff changeset
23 #default_models CID_IT_TRYP_CSP DIR_TO_PEPNOVO_MODELS