Mercurial > repos > galaxyp > openms_spectrafilterthresholdmower

annotate SpectraFilterThresholdMower.xml @ 1:3efb67a73366 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author galaxyp
date Wed, 09 Aug 2017 09:14:22 -0400
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d4fa92b05b88 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
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3 <!--Proposed Tool Section: [Identification]-->
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4 <tool id="SpectraFilterThresholdMower" name="SpectraFilterThresholdMower" version="2.2.0">
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5 <description>Applies thresholdfilter to peak spectra.</description>
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6 <macros>
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7 <token name="@EXECUTABLE@">SpectraFilterThresholdMower</token>
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8 <import>macros.xml</import>
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9 </macros>
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10 <expand macro="references"/>
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11 <expand macro="stdio"/>
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12 <expand macro="requirements"/>
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13 <command>SpectraFilterThresholdMower
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14
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15 #if $param_in:
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16 -in $param_in
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17 #end if
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18 #if $param_out:
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19 -out $param_out
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20 #end if
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21 #if $param_algorithm_threshold:
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22 -algorithm:threshold $param_algorithm_threshold
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23 #end if
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24 #if $adv_opts.adv_opts_selector=='advanced':
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25 #if $adv_opts.param_force:
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26 -force
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27 #end if
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28 #end if
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29 </command>
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30 <inputs>
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31 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
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32 <param name="param_algorithm_threshold" type="float" value="0.05" label="Intensity threshold, peaks below this threshold are discarded" help="(-threshold) "/>
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33 <expand macro="advanced_options">
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34 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
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35 </expand>
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36 </inputs>
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37 <outputs>
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38 <data name="param_out" format="mzml"/>
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39 </outputs>
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40 <help>Applies thresholdfilter to peak spectra.
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41
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42
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43 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterThresholdMower.html</help>
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44 </tool>