Mercurial > repos > galaxyp > openms_spectrastsearchadapter

diff SpectraSTSearchAdapter.xml @ 6:ab22e4296eaf draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:50:38 -0400
parents c54dbaf4802b
children 28e96ae21a44
line wrap: on
line diff
--- a/SpectraSTSearchAdapter.xml	Tue Mar 20 15:13:07 2018 -0400
+++ b/SpectraSTSearchAdapter.xml	Fri May 17 04:50:38 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>SpectraSTSearchAdapter
+  <command detect_errors="aggressive"><![CDATA[SpectraSTSearchAdapter
 
 -spectra_files
   #for token in $param_spectra_files:
@@ -64,7 +64,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_spectra_files" type="data" format="mzml,mzxml,mzData,dta,msp" multiple="true" optional="False" size="30" label="File names(s) of spectra to be searched" help="(-spectra_files) ">
       <sanitizer>
@@ -96,5 +96,5 @@
   <help>Interface to the SEARCH Mode of the SpectraST executable
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SpectraSTSearchAdapter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_SpectraSTSearchAdapter.html</help>
 </tool>