Mercurial > repos > galaxyp > openms_svmtheoreticalspectrumgeneratortrainer

comparison SvmTheoreticalSpectrumGeneratorTrainer.xml @ 1:be688ba2bc09 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author galaxyp
date Wed, 09 Aug 2017 09:23:27 -0400
parents a92f7bc73817
children 6d9c00e778ff
comparison
equal deleted inserted replaced
0:a92f7bc73817 1:be688ba2bc09
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="SvmTheoreticalSpectrumGeneratorTrainer" name="SvmTheoreticalSpectrumGeneratorTrainer" version="2.1.0"> 4 <tool id="SvmTheoreticalSpectrumGeneratorTrainer" name="SvmTheoreticalSpectrumGeneratorTrainer" version="2.2.0">
5 <description>Trainer for SVM models as input for SvmTheoreticalSpectrumGenerator</description> 5 <description>Trainer for SVM models as input for SvmTheoreticalSpectrumGenerator</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">SvmTheoreticalSpectrumGeneratorTrainer</token> 7 <token name="@EXECUTABLE@">SvmTheoreticalSpectrumGeneratorTrainer</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
38 #end if 38 #end if
39 #if $param_algorithm_peak_tolerance: 39 #if $param_algorithm_peak_tolerance:
40 -algorithm:peak_tolerance $param_algorithm_peak_tolerance 40 -algorithm:peak_tolerance $param_algorithm_peak_tolerance
41 #end if 41 #end if
42 #if $param_algorithm_add_b_ions: 42 #if $param_algorithm_add_b_ions:
43 -algorithm:add_b_ions $param_algorithm_add_b_ions 43 -algorithm:add_b_ions
44 #if " " in str($param_algorithm_add_b_ions):
45 "$param_algorithm_add_b_ions"
46 #else
47 $param_algorithm_add_b_ions
48 #end if
44 #end if 49 #end if
45 #if $param_algorithm_add_y_ions: 50 #if $param_algorithm_add_y_ions:
46 -algorithm:add_y_ions $param_algorithm_add_y_ions 51 -algorithm:add_y_ions
52 #if " " in str($param_algorithm_add_y_ions):
53 "$param_algorithm_add_y_ions"
54 #else
55 $param_algorithm_add_y_ions
56 #end if
47 #end if 57 #end if
48 #if $param_algorithm_add_a_ions: 58 #if $param_algorithm_add_a_ions:
49 -algorithm:add_a_ions 59 -algorithm:add_a_ions
50 #end if 60 #end if
51 #if $param_algorithm_add_c_ions: 61 #if $param_algorithm_add_c_ions:
71 #end if 81 #end if
72 #if $param_algorithm_svm_svr_type: 82 #if $param_algorithm_svm_svr_type:
73 -algorithm:svm:svr_type $param_algorithm_svm_svr_type 83 -algorithm:svm:svr_type $param_algorithm_svm_svr_type
74 #end if 84 #end if
75 #if $param_algorithm_svm_scaling: 85 #if $param_algorithm_svm_scaling:
76 -algorithm:svm:scaling $param_algorithm_svm_scaling 86 -algorithm:svm:scaling
87 #if " " in str($param_algorithm_svm_scaling):
88 "$param_algorithm_svm_scaling"
89 #else
90 $param_algorithm_svm_scaling
91 #end if
77 #end if 92 #end if
78 #if $param_algorithm_svm_scaling_lower: 93 #if $param_algorithm_svm_scaling_lower:
79 -algorithm:svm:scaling_lower $param_algorithm_svm_scaling_lower 94 -algorithm:svm:scaling_lower $param_algorithm_svm_scaling_lower
80 #end if 95 #end if
81 #if $param_algorithm_svm_scaling_upper: 96 #if $param_algorithm_svm_scaling_upper:
104 #end if 119 #end if
105 #if $param_algorithm_svm_svc_nu: 120 #if $param_algorithm_svm_svc_nu:
106 -algorithm:svm:svc:nu $param_algorithm_svm_svc_nu 121 -algorithm:svm:svc:nu $param_algorithm_svm_svc_nu
107 #end if 122 #end if
108 #if $param_algorithm_svm_svc_balancing: 123 #if $param_algorithm_svm_svc_balancing:
109 -algorithm:svm:svc:balancing $param_algorithm_svm_svc_balancing 124 -algorithm:svm:svc:balancing
125 #if " " in str($param_algorithm_svm_svc_balancing):
126 "$param_algorithm_svm_svc_balancing"
127 #else
128 $param_algorithm_svm_svc_balancing
129 #end if
110 #end if 130 #end if
111 #if $param_algorithm_svm_svc_degree_start: 131 #if $param_algorithm_svm_svc_degree_start:
112 -algorithm:svm:svc:degree_start $param_algorithm_svm_svc_degree_start 132 -algorithm:svm:svc:degree_start $param_algorithm_svm_svc_degree_start
113 #end if 133 #end if
114 #if $param_algorithm_svm_svc_degree_step_size: 134 #if $param_algorithm_svm_svc_degree_step_size: