Mercurial > repos > galaxyp > openms_svmtheoreticalspectrumgeneratortrainer
diff SvmTheoreticalSpectrumGeneratorTrainer.xml @ 1:be688ba2bc09 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author | galaxyp |
---|---|
date | Wed, 09 Aug 2017 09:23:27 -0400 |
parents | a92f7bc73817 |
children | 6d9c00e778ff |
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--- a/SvmTheoreticalSpectrumGeneratorTrainer.xml Wed Mar 01 12:36:05 2017 -0500 +++ b/SvmTheoreticalSpectrumGeneratorTrainer.xml Wed Aug 09 09:23:27 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Utilities]--> -<tool id="SvmTheoreticalSpectrumGeneratorTrainer" name="SvmTheoreticalSpectrumGeneratorTrainer" version="2.1.0"> +<tool id="SvmTheoreticalSpectrumGeneratorTrainer" name="SvmTheoreticalSpectrumGeneratorTrainer" version="2.2.0"> <description>Trainer for SVM models as input for SvmTheoreticalSpectrumGenerator</description> <macros> <token name="@EXECUTABLE@">SvmTheoreticalSpectrumGeneratorTrainer</token> @@ -40,10 +40,20 @@ -algorithm:peak_tolerance $param_algorithm_peak_tolerance #end if #if $param_algorithm_add_b_ions: - -algorithm:add_b_ions $param_algorithm_add_b_ions + -algorithm:add_b_ions + #if " " in str($param_algorithm_add_b_ions): + "$param_algorithm_add_b_ions" + #else + $param_algorithm_add_b_ions + #end if #end if #if $param_algorithm_add_y_ions: - -algorithm:add_y_ions $param_algorithm_add_y_ions + -algorithm:add_y_ions + #if " " in str($param_algorithm_add_y_ions): + "$param_algorithm_add_y_ions" + #else + $param_algorithm_add_y_ions + #end if #end if #if $param_algorithm_add_a_ions: -algorithm:add_a_ions @@ -73,7 +83,12 @@ -algorithm:svm:svr_type $param_algorithm_svm_svr_type #end if #if $param_algorithm_svm_scaling: - -algorithm:svm:scaling $param_algorithm_svm_scaling + -algorithm:svm:scaling + #if " " in str($param_algorithm_svm_scaling): + "$param_algorithm_svm_scaling" + #else + $param_algorithm_svm_scaling + #end if #end if #if $param_algorithm_svm_scaling_lower: -algorithm:svm:scaling_lower $param_algorithm_svm_scaling_lower @@ -106,7 +121,12 @@ -algorithm:svm:svc:nu $param_algorithm_svm_svc_nu #end if #if $param_algorithm_svm_svc_balancing: - -algorithm:svm:svc:balancing $param_algorithm_svm_svc_balancing + -algorithm:svm:svc:balancing + #if " " in str($param_algorithm_svm_svc_balancing): + "$param_algorithm_svm_svc_balancing" + #else + $param_algorithm_svm_svc_balancing + #end if #end if #if $param_algorithm_svm_svc_degree_start: -algorithm:svm:svc:degree_start $param_algorithm_svm_svc_degree_start