Mercurial > repos > galaxyp > package_peptideshaker_0_20_1

annotate tool_dependencies.xml @ 2:cfd55b6c4fa2 draft default tip

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Update.
author galaxyp
date Mon, 16 Sep 2013 13:53:43 -0400
parents 856cf4a8d9e3
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="peptide_shaker" version="0.20.1">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://peptide-shaker.googlecode.com/files/PeptideShaker-0.20.1.zip</action>
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7 <action type="shell_command">chmod -R o+w resources</action>
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8 <action type="shell_command">wget https://gist.github.com/jmchilton/5002161/raw/f1fe76d6e6eed99a768ed0b9f41c2d0a6a4b24b7/PeptideShaker</action>
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9 <action type="shell_command">wget https://gist.github.com/jmchilton/5002161/raw/8a17d5fb589984365284e55a98a455c2b47da54f/PeptideShakerCLI</action>
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10 <action type="shell_command">chmod +x PeptideShaker</action>
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11 <action type="shell_command">chmod +x PeptideShakerCLI</action>
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12 <action type="move_directory_files">
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13 <source_directory>.</source_directory>
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14 <destination_directory>$INSTALL_DIR/</destination_directory>
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15 </action>
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16 <action type="set_environment">
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17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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22 Install Galaxy package application for PeptideShaker 0.20.1.
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23 </readme>
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24 </package>
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25 </tool_dependency>