Mercurial > repos > galaxyp > peptideshaker

comparison macros_basic.xml @ 55:bb0130ff73ce draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit f27e376ff604cd8faf57c63f25ddcfd61ca9db6a"
author galaxyp
date Fri, 15 Jan 2021 14:06:27 +0000
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children 1beff3ddce58
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54:7fdd9119cc4f 55:bb0130ff73ce
1 <macros>
2 <xml name="stdio">
3 <stdio>
4 <exit_code range="1:" level="fatal" description="Job Failed" />
5 <regex match="java.*Exception" level="fatal" description="Java Exception"/>
6 <regex match="Could not reserve enough space for * object heap" level="fatal" description="Out of memory"/>
7 <regex match="Could not create the Java virtual machine" level="fatal" description="JVM Error"/>
8 <regex match="PeptideShaker ran out of memory" level="fatal" description="JVM Error"/>
9 <regex match="CompomicsError" level="fatal" description="Compomics Error"/>
10 </stdio>
11 </xml>
12 <token name="@SEARCHGUI_MAJOR_VERSION@">4</token>
13 <token name="@SEARCHGUI_VERSION@">4.0.7</token>
14 <token name="@SEARCHGUI_VERSION_SUFFIX@">0</token>
15 <token name="@PEPTIDESHAKER_VERSION@">2.0.5</token>
16 <token name="@PEPTIDESHAKER_VERSION_SUFFIX@">3</token>
17 <xml name="citations">
18 <citations>
19 <citation type="doi">10.1186/1471-2105-12-70</citation>
20 <citation type="doi">10.1002/pmic.201000595</citation>
21 <citation type="doi">doi:10.1038/nbt.3109</citation>
22 </citations>
23 </xml>
24 </macros>