Mercurial > repos > galaxyp > peptideshaker
view admin_scripts/species @ 20:2cafc729b2ae draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 0e976aeeed9d516e0ad4735dc847b1f2eba3532b
author | iracooke |
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date | Sun, 31 May 2015 09:05:57 -0400 |
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>Fungi Ashbya gossypii agossypii_eg_gene Aspergillus clavatus aclavatus_eg_gene Aspergillus flavus aflavus_eg_gene Aspergillus fumigatus afumigatus_eg_gene Aspergillus fumigatusa1163 afumigatusa1163_eg_gene Aspergillus nidulans anidulans_eg_gene Aspergillus niger aniger_eg_gene Aspergillus oryzae aoryzae_eg_gene Aspergillus terreus aterreus_eg_gene Blumeria graminis bgraminis_eg_gene Botrytis cinerea bcinerea_eg_gene Colletotrichum gloeosporioides cgloeosporioides_eg_gene Colletotrichum higginsianum chigginsianum_eg_gene Colletotrichum orbiculare corbiculare_eg_gene Cryptococcus neoformans cneoformans_eg_gene Dothistroma septosporum dseptosporum_eg_gene Fusarium fujikuroi ffujikuroi_eg_gene Fusarium graminearum fgraminearum_eg_gene Fusarium oxysporum foxysporum_eg_gene Fusarium pseudograminearum fpseudograminearum_eg_gene Fusarium solani fsolani_eg_gene Fusarium verticillioides fverticillioides_eg_gene Gaeumannomyces graminis ggraminis_eg_gene Colletotrichum graminicola cgraminicola_eg_gene Komagataella pastoris kpastoris_eg_gene Leptosphaeria maculans lmaculans_eg_gene Magnaporthe oryzae moryzae_eg_gene Magnaporthe poae mpoae_eg_gene Melampsora larici-populina mlaricipopulina_eg_gene Neosartorya fischeri nfischeri_eg_gene Neurospora crassa ncrassa_eg_gene Phaeosphaeria nodorum pnodorum_eg_gene Puccinia graminis pgraminis_eg_gene Puccinia graminis Ug99 pgraminisug99_eg_gene Puccinia triticina ptriticina_eg_gene Pyrenophora teres pteres_eg_gene Pyrenophora tritici-repentis ptriticirepentis_eg_gene Saccharomyces cerevisiae scerevisiae_eg_gene Schizosaccharomyces cryophilus scryophilus_eg_gene Schizosaccharomyces japonicus japonicus_eg_gene Schizosaccharomyces octosporus octosporus_eg_gene Schizosaccharomyces pombe spombe_eg_gene Sclerotinia sclerotiorum ssclerotiorum_eg_gene Sporisorium reilianum sreilianum_eg_gene Trichoderma reesei treesei_eg_gene Trichoderma virens tvirens_eg_gene Tuber melanosporum tmelanosporum_eg_gene Ustilago maydis umaydis_eg_gene Verticillium dahliae JR2 vdahliaejr2_eg_gene Verticillium dahliae dahliae_eg_gene Yarrowia lipolytica ylipolytica_eg_gene Zymoseptoria tritici ztritici_eg_gene >Metazoa Acyrthosiphon pisum apisum_eg_gene Aedes aegypti (Yellow fever mosquito) aaegypti_eg_gene Amphimedon queenslandica aqueenslandica_eg_gene Anopheles darlingi adarlingi_eg_gene Anopheles gambiae (African malaria mosquito) agambiae_eg_gene Apis mellifera amellifera_eg_gene Atta cephalotes acephalotes_eg_gene Bombyx mori bmori_eg_gene Brugia malayi bmalayi_eg_gene Caenorhabditis brenneri cbrenneri_eg_gene Caenorhabditis briggsae cbriggsae_eg_gene Caenorhabditis elegans celegans_eg_gene Caenorhabditis japonica cjaponica_eg_gene Caenorhabditis remanei cremanei_eg_gene Culex quinquefasciatus (Southern house mosquito) cquinquefasciatus_eg_gene Danaus plexippus dplexippus_eg_gene Daphnia pulex dpulex_eg_gene Dendroctonus ponderosae ponderosae_eg_gene Drosophila ananassae dananassae_eg_gene Drosophila erecta derecta_eg_gene Drosophila grimshawi dgrimshawi_eg_gene Drosophila melanogaster (Fruit fly) dmelanogaster_eg_gene Drosophila mojavensis dmojavensis_eg_gene Drosophila persimilis dpersimilis_eg_gene Drosophila pseudoobscura dpseudoobscura_eg_gene Drosophila sechellia dsechellia_eg_gene Drosophila simulans dsimulans_eg_gene Drosophila virilis dvirilis_eg_gene Drosophila willistoni dwillistoni_eg_gene Drosophila yakuba dyakuba_eg_gene Heliconius melpomene hmelpomene_eg_gene Helobdella robusta robusta_eg_gene Ixodes scapularis (Black-legged tick) iscapularis_eg_gene Loa loa lloa_eg_gene Lottia gigantea lgigantea_eg_gene Megaselia scalaris mscalaris_eg_gene Melitaea cinxia mcinxia_eg_gene Mnemiopsis leidyi mleidyi_eg_gene Nasonia vitripennis nvitripennis_eg_gene Nematostella vectensis nvectensis_eg_gene Onchocerca volvulus ovolvulus_eg_gene Pediculus humanus (Human louse) phumanus_eg_gene Pristionchus pacificus ppacificus_eg_gene Rhodnius prolixus rprolixus_eg_gene Schistosoma mansoni smansoni_eg_gene Solenopsis invicta (Red fire ant) sinvicta_eg_gene Strigamia maritima smaritima_eg_gene Strongylocentrotus purpuratus spurpuratus_eg_gene Tetranychus urticae turticae_eg_gene Tribolium castaneum (red flour beetle) tcastaneum_eg_gene Trichinella spiralis tspiralis_eg_gene Trichoplax adhaerens tadhaerens_eg_gene Zootermopsis nevadensis znevadensis_eg_gene >Plants Amborella (Amborella trichopoda) atrichopoda_eg_gene Arabidopsis lyrata (Lyrate rockcress) alyrata_eg_gene Arabidopsis thaliana (Thale-cress) athaliana_eg_gene Brachypodium distachyon (False brome) bdistachyon_eg_gene Brassica oleracea boleracea_eg_gene Brassica rapa genes (Field mustard) brapa_eg_gene Chlamydomonas reinhardtii (Green algae) creinhardtii_eg_gene Cyanidioschyzon merolae (Red algae) cmerolae_eg_gene Glycine max (Soybean) gmax_eg_gene Hordeum vulgare (Barley) hvulgare_eg_gene Leersia perrieri (Leersia) lperrieri_eg_gene Medicago truncatula (Barrel medic) mtruncatula_eg_gene Musa acuminata (Banana) macuminata_eg_gene Oryza brachyantha obrachyantha_eg_gene Oryza glumaepatula oglumaepatula_eg_gene Oryza meridionalis omeridionalis_eg_gene Oryza nivara onivara_eg_gene Oryza punctata opunctata_eg_gene Oryza rufipogon (Common wild rice) orufipogon_eg_gene Oryza sativa (Indica rice) osativa_eg_gene Oryza sativa Indica Group oindica_eg_gene Oryza sativa Japonica (Japonica rice) osativa_eg_gene Ostreococcus lucimarinus (Green algae) olucimarinus_eg_gene Physcomitrella patens ppatens_eg_gene Physcomitrella patens (Moss) ppatens_eg_gene Populus trichocarpa ptrichocarpa_eg_gene Populus trichocarpa (Western balsam poplar) ptrichocarpa_eg_gene Prunus persica (Peach) ppersica_eg_gene Selaginella moellendorffii (Spike moss) smoellendorffii_eg_gene Setaria italica (Foxtail millet) sitalica_eg_gene Solanum lycopersicum (Tomato) slycopersicum_eg_gene Solanum tuberosum (Potato) stuberosum_eg_gene Sorghum bicolor (Sorghum) sbicolor_eg_gene Theobroma cacao (Cocoa) tcacao_eg_gene Triticum aestivum (Bread wheat) taestivum_eg_gene Triticum urartu (Einkorn) turartu_eg_gene Vitis vinifera (Wine grape) vvinifera_eg_gene Zea mays (Maize) zmays_eg_gene >Protists Albugo laibachii alaibachii_eg_gene Bigelowiella natans bnatans_eg_gene Dictyostelium discoideum ddiscoideum_eg_gene Emiliania huxleyi ehuxleyi_eg_gene Entamoeba histolytica ehistolytica_eg_gene Giardia lamblia glamblia_eg_gene Guillardia theta CCMP2712 gtheta_eg_gene Hyaloperonospora arabidopsidis harabidopsidis_eg_gene Leishmania major lmajor_eg_gene Paramecium tetraurelia ptetraurelia_eg_gene Phaeodactylum tricornutum ptricornutum_eg_gene Phytophthora infestans pinfestans_eg_gene Phytophthora kernoviae pkernoviae_eg_gene Phytophthora lateralis plateralis_eg_ge Phytophthora parasitica pparasitica_eg_gene Phytophthora ramorum pramorum_eg_gene Phytophthora sojae psojae_eg_gene Plasmodium berghei pberghei_eg_gene Plasmodium chabaudi pchabaudi_eg_gene Plasmodium falciparum pfalciparum_eg_gene Plasmodium knowlesi pknowlesi_eg_gene Plasmodium vivax pvivax_eg_gene Pythium aphanidermatum paphanidermatum_eg_gene Pythium arrhenomanes parrhenomanes_eg_gene Pythium irregulare pirregulare_eg_gene Pythium iwayamai piwayamai_eg_gene Pythium ultimum pultimum_eg_gene Pythium vexans pvexans_eg_gene Tetrahymena thermophila tthermophila_eg_gene Thalassiosira pseudonana tpseudonana_eg_gene Toxoplasma gondii tgondii_eg_gene Trypanosoma brucei tbrucei_eg_gene >Vertebrates Alpaca (Vicugna pacos) vpacos_gene_ensembl Amazon molly (Poecilia formosa) pformosa_gene_ensembl Anole lizard (Anolis carolinensis) acarolinensis_gene_ensembl Armadillo (Dasypus novemcinctus) dnovemcinctus_gene_ensembl Bushbaby (Otolemur garnettii) ogarnettii_gene_ensembl C. elegans (Caenorhabditis elegans) celegans_gene_ensembl C.intestinalis (Ciona intestinalis) cintestinalis_gene_ensembl C.savignyi (Ciona savignyi) csavignyi_gene_ensembl Cat (Felis catus) fcatus_gene_ensembl Cave fish (Astyanax mexicanus) amexicanus_gene_ensembl Chicken (Gallus gallus) ggallus_gene_ensembl Chimpanzee (Pan troglodytes) ptroglodytes_gene_ensembl Chinese softshell turtle (Pelodiscus sinensis) psinensis_gene_ensembl Cod (Gadus morhua) gmorhua_gene_ensembl Coelacanth (Latimeria chalumnae) lchalumnae_gene_ensembl Cow (Bos taurus) btaurus_gene_ensembl Dog (Canis lupus familiaris) cfamiliaris_gene_ensembl Dolphin (Tursiops truncatus) ttruncatus_gene_ensembl Duck (Anas platyrhynchos) aplatyrhynchos_gene_ensembl Elephant (Loxodonta africana) lafricana_gene_ensembl Ferret (Mustela putorius furo) mfuro_gene_ensembl Flycatcher (Ficedula albicollis) falbicollis_gene_ensembl Fruitfly (Drosophila melanogaster) dmelanogaster_gene_ensembl Fugu (Takifugu rubripes) trubripes_gene_ensembl Gibbon (Nomascus leucogenys) nleucogenys_gene_ensembl Gorilla (Gorilla gorilla gorilla) ggorilla_gene_ensembl Guinea Pig (Cavia porcellus) cporcellus_gene_ensembl Hedgehog (Erinaceus europaeus) eeuropaeus_gene_ensembl Horse (Equus caballus) ecaballus_gene_ensembl Human (Homo sapiens) hsapiens_gene_ensembl Hyrax (Procavia capensis) pcapensis_gene_ensembl Kangaroo rat (Dipodomys ordii) dordii_gene_ensembl Lamprey (Petromyzon marinus) pmarinus_gene_ensembl Lesser hedgehog tenrec (Echinops telfairi) etelfairi_gene_ensembl Macaque (Macaca mulatta) mmulatta_gene_ensembl Marmoset (Callithrix jacchus) cjacchus_gene_ensembl Medaka (Oryzias latipes) olatipes_gene_ensembl Megabat (Pteropus vampyrus) pvampyrus_gene_ensembl Microbat (Myotis lucifugus) mlucifugus_gene_ensembl Mouse (Mus musculus) mmusculus_gene_ensembl Mouse Lemur (Microcebus murinus) mmurinus_gene_ensembl Opossum (Monodelphis domestica) mdomestica_gene_ensembl Orangutan (Pongo abelii) pabelii_gene_ensembl Panda (Ailuropoda melanoleuca) amelanoleuca_gene_ensembl Pig (Sus scrofa) sscrofa_gene_ensembl Pika (Ochotona princeps) oprinceps_gene_ensembl Platyfish (Xiphophorus maculatus) xmaculatus_gene_ensembl Platypus (Ornithorhynchus anatinus) oanatinus_gene_ensembl Rabbit (Oryctolagus cuniculus) ocuniculus_gene_ensembl Rat (Rattus norvegicus) rnorvegicus_gene_ensembl S. cerevisiae (Saccharomyces cerevisiae) scerevisiae_gene_ensembl Sheep (Ovis aries) oaries_gene_ensembl Shrew (Sorex araneus) saraneus_gene_ensembl Sloth (Choloepus hoffmanni) choffmanni_gene_ensembl Spotted gar (Lepisosteus oculatus) loculatus_gene_ensembl Squirrel (Ictidomys tridecemlineatus) itridecemlineatus_gene_ensembl Stickleback (Gasterosteus aculeatus) gaculeatus_gene_ensembl Tarsier (Tarsius syrichta) tsyrichta_gene_ensembl Tasmanian devil (Sarcophilus harrisii) sharrisii_gene_ensembl Tetraodon (Tetraodon nigroviridis) tnigroviridis_gene_ensembl Tilapia (Oreochromis niloticus) oniloticus_gene_ensembl Tree Shrew (Tupaia belangeri) tbelangeri_gene_ensembl Turkey (Meleagris gallopavo) mgallopavo_gene_ensembl Vervet-AGM (Chlorocebus sabaeus) csabaeus_gene_ensembl Wallaby (Macropus eugenii) meugenii_gene_ensembl Xenopus (Xenopus tropicalis) xtropicalis_gene_ensembl Zebra Finch (Taeniopygia guttata) tguttata_gene_ensembl Zebrafish (Danio rerio) drerio_gene_ensembl