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1 <tool id="pepxml_to_xls" name="Convert PepXML to Tabular" version="0.1.1">
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2 <description></description>
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3
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4 <requirements>
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5 <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement>
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6 </requirements>
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7
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8 <command interpreter="python">
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9 pepxml_viewer_wrapper.py --input=${input} --export_spreadsheet $append_unmodified_peptide
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10 </command>
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11
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12 <inputs>
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13 <param format="pepxml" name="input" type="data" label="PepXML Input"/>
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14 <param name="append_unmodified_peptide" type="boolean" truevalue="--append_unmodified_peptide" falsevalue="" label="Append Unmodified Peptide" help="Append unmodified peptide to tabular report for downstream analysis." />
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15 </inputs>
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16
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17 <outputs>
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18 <data format="tabular" name="output" from_work_dir="input.pep.xls" />
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19 </outputs>
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20
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21 <help>
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22 </help>
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23 </tool>
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