--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/pepxml_to_xls.xml	Wed Oct 08 13:49:16 2014 -0400
@@ -0,0 +1,23 @@
+<tool id="pepxml_to_xls" name="Convert PepXML to Tabular" version="0.1.1">
+  <description></description>
+
+  <requirements>
+    <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement>
+  </requirements>
+
+  <command interpreter="python">
+    pepxml_viewer_wrapper.py --input=${input} --export_spreadsheet $append_unmodified_peptide
+  </command>
+
+  <inputs>
+    <param format="pepxml" name="input" type="data" label="PepXML Input"/>
+    <param name="append_unmodified_peptide" type="boolean" truevalue="--append_unmodified_peptide" falsevalue="" label="Append Unmodified Peptide" help="Append unmodified peptide to tabular report for downstream analysis." />
+  </inputs>
+
+  <outputs>
+    <data format="tabular" name="output" from_work_dir="input.pep.xls" />
+  </outputs>
+
+  <help>
+  </help>
+</tool>