Mercurial > repos > galaxyp > pepxml_to_xls
comparison tools/pepxml_to_xls.xml @ 0:2e6912b6ee38 draft default tip
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| author | galaxyp |
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| date | Wed, 08 Oct 2014 13:49:16 -0400 |
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| -1:000000000000 | 0:2e6912b6ee38 |
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| 1 <tool id="pepxml_to_xls" name="Convert PepXML to Tabular" version="0.1.1"> | |
| 2 <description></description> | |
| 3 | |
| 4 <requirements> | |
| 5 <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement> | |
| 6 </requirements> | |
| 7 | |
| 8 <command interpreter="python"> | |
| 9 pepxml_viewer_wrapper.py --input=${input} --export_spreadsheet $append_unmodified_peptide | |
| 10 </command> | |
| 11 | |
| 12 <inputs> | |
| 13 <param format="pepxml" name="input" type="data" label="PepXML Input"/> | |
| 14 <param name="append_unmodified_peptide" type="boolean" truevalue="--append_unmodified_peptide" falsevalue="" label="Append Unmodified Peptide" help="Append unmodified peptide to tabular report for downstream analysis." /> | |
| 15 </inputs> | |
| 16 | |
| 17 <outputs> | |
| 18 <data format="tabular" name="output" from_work_dir="input.pep.xls" /> | |
| 19 </outputs> | |
| 20 | |
| 21 <help> | |
| 22 </help> | |
| 23 </tool> |