Mercurial > repos > galaxyp > percolator

comparison test-data/decoy.mzid @ 0:3a49065a05d6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit b4871f9659a924a68430aed3a93f4f9bad733fd6
author galaxyp
date Wed, 07 Dec 2016 16:43:51 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:3a49065a05d6
1 <?xml version="1.0" encoding="UTF-8"?>
2 <MzIdentML id="MS-GF+" version="1.1.0" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2016-04-08T12:44:47" >
3 <cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
4 <cv id="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" version="3.30.0" fullName="PSI-MS"/>
5 <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/>
6 <cv id="UO" uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo" fullName="UNIT-ONTOLOGY"/>
7 </cvList>
8 <AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
9 <AnalysisSoftware version="Beta (v10072)" name="MS-GF+" id="ID_software">
10 <SoftwareName>
11 <cvParam accession="MS:1002048" cvRef="PSI-MS" name="MS-GF+"/>
12 </SoftwareName>
13 </AnalysisSoftware>
14 </AnalysisSoftwareList>
15 <SequenceCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
16 <DBSequence accession="decoy_ENSP00000345809" searchDatabase_ref="SearchDB_1" length="1029" id="DBSeq10384886">
17 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000345809 gene:decoy_ENSG00000186448 transcript:decoy_ENST00000344387" name="protein description"/>
18 </DBSequence>
19 <DBSequence accession="decoy_ENSP00000379370" searchDatabase_ref="SearchDB_1" length="1029" id="DBSeq10386358">
20 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000379370 gene:decoy_ENSG00000186448 transcript:decoy_ENST00000396058" name="protein description"/>
21 </DBSequence>
22 <DBSequence accession="decoy_ENSP00000485709" searchDatabase_ref="SearchDB_1" length="1029" id="DBSeq37935494">
23 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000485709 gene:decoy_ENSG00000281709 transcript:decoy_ENST00000628172" name="protein description"/>
24 </DBSequence>
25 <DBSequence accession="decoy_ENSP00000486739" searchDatabase_ref="SearchDB_1" length="1029" id="DBSeq37936966">
26 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000486739 gene:decoy_ENSG00000281709 transcript:decoy_ENST00000627845" name="protein description"/>
27 </DBSequence>
28 <DBSequence accession="decoy_ENSP00000432575" searchDatabase_ref="SearchDB_1" length="213" id="DBSeq34794905">
29 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000432575 gene:decoy_ENSG00000254505 transcript:decoy_ENST00000533011" name="protein description"/>
30 </DBSequence>
31 <DBSequence accession="decoy_ENSP00000364956" searchDatabase_ref="SearchDB_1" length="1019" id="DBSeq9617798">
32 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000364956 gene:decoy_ENSG00000116786 transcript:decoy_ENST00000375799" name="protein description"/>
33 </DBSequence>
34 <DBSequence accession="decoy_ENSP00000364950" searchDatabase_ref="SearchDB_1" length="999" id="DBSeq9618818">
35 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000364950 gene:decoy_ENSG00000116786 transcript:decoy_ENST00000375793" name="protein description"/>
36 </DBSequence>
37 <DBSequence accession="decoy_ENSP00000287598" searchDatabase_ref="SearchDB_1" length="1050" id="DBSeq17446714">
38 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000287598 gene:decoy_ENSG00000156970 transcript:decoy_ENST00000287598" name="protein description"/>
39 </DBSequence>
40 <DBSequence accession="decoy_ENSP00000398470" searchDatabase_ref="SearchDB_1" length="1064" id="DBSeq17447862">
41 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000398470 gene:decoy_ENSG00000156970 transcript:decoy_ENST00000412359" name="protein description"/>
42 </DBSequence>
43 <DBSequence accession="decoy_ENSP00000220244" searchDatabase_ref="SearchDB_1" length="1361" id="DBSeq15384937">
44 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000220244 gene:decoy_ENSG00000103888 transcript:decoy_ENST00000220244" name="protein description"/>
45 </DBSequence>
46 <DBSequence accession="decoy_ENSP00000378177" searchDatabase_ref="SearchDB_1" length="1361" id="DBSeq15386299">
47 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000378177 gene:decoy_ENSG00000103888 transcript:decoy_ENST00000394685" name="protein description"/>
48 </DBSequence>
49 <DBSequence accession="decoy_ENSP00000348583" searchDatabase_ref="SearchDB_1" length="1361" id="DBSeq15387661">
50 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000348583 gene:decoy_ENSG00000103888 transcript:decoy_ENST00000356249" name="protein description"/>
51 </DBSequence>
52 <DBSequence accession="decoy_ENSP00000480324" searchDatabase_ref="SearchDB_1" length="992" id="DBSeq15389246">
53 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000480324 gene:decoy_ENSG00000103888 transcript:decoy_ENST00000611615" name="protein description"/>
54 </DBSequence>
55 <DBSequence accession="decoy_ENSP00000416508" searchDatabase_ref="SearchDB_1" length="1226" id="DBSeq33076469">
56 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000416508 gene:decoy_ENSG00000133657 transcript:decoy_ENST00000439040" name="protein description"/>
57 </DBSequence>
58 <DBSequence accession="decoy_ENSP00000256031" searchDatabase_ref="SearchDB_1" length="1226" id="DBSeq33078011">
59 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000256031 gene:decoy_ENSG00000133657 transcript:decoy_ENST00000256031" name="protein description"/>
60 </DBSequence>
61 <DBSequence accession="decoy_ENSP00000482200" searchDatabase_ref="SearchDB_1" length="701" id="DBSeq33079238">
62 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000482200 gene:decoy_ENSG00000133657 transcript:decoy_ENST00000619199" name="protein description"/>
63 </DBSequence>
64 <DBSequence accession="decoy_ENSP00000393416" searchDatabase_ref="SearchDB_1" length="638" id="DBSeq15936872">
65 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000393416 gene:decoy_ENSG00000197647 transcript:decoy_ENST00000419886" name="protein description"/>
66 </DBSequence>
67 <DBSequence accession="decoy_ENSP00000339767" searchDatabase_ref="SearchDB_1" length="673" id="DBSeq15937511">
68 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000339767 gene:decoy_ENSG00000197647 transcript:decoy_ENST00000344980" name="protein description"/>
69 </DBSequence>
70 <DBSequence accession="decoy_ENSP00000359524" searchDatabase_ref="SearchDB_1" length="72" id="DBSeq14626897">
71 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000359524 gene:decoy_ENSG00000203923 transcript:decoy_ENST00000370493" name="protein description"/>
72 </DBSequence>
73 <DBSequence accession="decoy_ENSP00000373539" searchDatabase_ref="SearchDB_1" length="2551" id="DBSeq1785704">
74 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000373539 gene:decoy_ENSG00000136011 transcript:decoy_ENST00000388887" name="protein description"/>
75 </DBSequence>
76 <DBSequence accession="decoy_ENSP00000467740" searchDatabase_ref="SearchDB_1" length="917" id="DBSeq18923735">
77 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000467740 gene:decoy_ENSG00000181626 transcript:decoy_ENST00000587848" name="protein description"/>
78 </DBSequence>
79 <DBSequence accession="decoy_ENSP00000284061" searchDatabase_ref="SearchDB_1" length="567" id="DBSeq14136392">
80 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000284061 gene:decoy_ENSG00000153933 transcript:decoy_ENST00000284061" name="protein description"/>
81 </DBSequence>
82 <DBSequence accession="decoy_ENSP00000458493" searchDatabase_ref="SearchDB_1" length="456" id="DBSeq14137138">
83 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000458493 gene:decoy_ENSG00000153933 transcript:decoy_ENST00000572944" name="protein description"/>
84 </DBSequence>
85 <DBSequence accession="decoy_ENSP00000354117" searchDatabase_ref="SearchDB_1" length="5604" id="DBSeq25732282">
86 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000354117 gene:decoy_ENSG00000155657 transcript:decoy_ENST00000360870" name="protein description"/>
87 </DBSequence>
88 <DBSequence accession="decoy_ENSP00000304127" searchDatabase_ref="SearchDB_1" length="436" id="DBSeq20420738">
89 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000304127 gene:decoy_ENSG00000171126 transcript:decoy_ENST00000306078" name="protein description"/>
90 </DBSequence>
91 <DBSequence accession="decoy_ENSP00000378424" searchDatabase_ref="SearchDB_1" length="425" id="DBSeq20421175">
92 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000378424 gene:decoy_ENSG00000171126 transcript:decoy_ENST00000394973" name="protein description"/>
93 </DBSequence>
94 <DBSequence accession="decoy_ENSP00000382590" searchDatabase_ref="SearchDB_1" length="228" id="DBSeq5474626">
95 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000382590 gene:decoy_ENSG00000241598 transcript:decoy_ENST00000399682" name="protein description"/>
96 </DBSequence>
97 <DBSequence accession="decoy_ENSP00000480265" searchDatabase_ref="SearchDB_1" length="219" id="DBSeq5474855">
98 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000480265 gene:decoy_ENSG00000241598 transcript:decoy_ENST00000616115" name="protein description"/>
99 </DBSequence>
100 <DBSequence accession="decoy_ENSP00000486418" searchDatabase_ref="SearchDB_1" length="228" id="DBSeq28350267">
101 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000486418 gene:decoy_ENSG00000277068 transcript:decoy_ENST00000629556" name="protein description"/>
102 </DBSequence>
103 <DBSequence accession="decoy_ENSP00000478428" searchDatabase_ref="SearchDB_1" length="219" id="DBSeq28350496">
104 <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000478428 gene:decoy_ENSG00000277068 transcript:decoy_ENST00000617720" name="protein description"/>
105 </DBSequence>
106 <Peptide id="Pep1">
107 <PeptideSequence>KECLSVRDKKKREPPTKQGQKWK</PeptideSequence>
108 <Modification monoisotopicMassDelta="229.162932" location="0">
109 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
110 </Modification>
111 <Modification monoisotopicMassDelta="229.162932" location="1">
112 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
113 </Modification>
114 <Modification monoisotopicMassDelta="57.021464" location="3">
115 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
116 </Modification>
117 <Modification monoisotopicMassDelta="229.162932" location="9">
118 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
119 </Modification>
120 <Modification monoisotopicMassDelta="229.162932" location="10">
121 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
122 </Modification>
123 <Modification monoisotopicMassDelta="229.162932" location="11">
124 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
125 </Modification>
126 <Modification monoisotopicMassDelta="229.162932" location="17">
127 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
128 </Modification>
129 <Modification monoisotopicMassDelta="229.162932" location="21">
130 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
131 </Modification>
132 <Modification monoisotopicMassDelta="229.162932" location="23">
133 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
134 </Modification>
135 </Peptide>
136 <Peptide id="Pep2">
137 <PeptideSequence>KKKKGLKK</PeptideSequence>
138 <Modification monoisotopicMassDelta="229.162932" location="0">
139 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
140 </Modification>
141 <Modification monoisotopicMassDelta="229.162932" location="1">
142 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
143 </Modification>
144 <Modification monoisotopicMassDelta="229.162932" location="2">
145 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
146 </Modification>
147 <Modification monoisotopicMassDelta="229.162932" location="3">
148 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
149 </Modification>
150 <Modification monoisotopicMassDelta="229.162932" location="4">
151 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
152 </Modification>
153 <Modification monoisotopicMassDelta="229.162932" location="7">
154 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
155 </Modification>
156 <Modification monoisotopicMassDelta="229.162932" location="8">
157 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
158 </Modification>
159 </Peptide>
160 <Peptide id="Pep3">
161 <PeptideSequence>KKKGIKKK</PeptideSequence>
162 <Modification monoisotopicMassDelta="229.162932" location="0">
163 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
164 </Modification>
165 <Modification monoisotopicMassDelta="229.162932" location="1">
166 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
167 </Modification>
168 <Modification monoisotopicMassDelta="229.162932" location="2">
169 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
170 </Modification>
171 <Modification monoisotopicMassDelta="229.162932" location="3">
172 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
173 </Modification>
174 <Modification monoisotopicMassDelta="229.162932" location="6">
175 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
176 </Modification>
177 <Modification monoisotopicMassDelta="229.162932" location="7">
178 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
179 </Modification>
180 <Modification monoisotopicMassDelta="229.162932" location="8">
181 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
182 </Modification>
183 </Peptide>
184 <Peptide id="Pep4">
185 <PeptideSequence>KEKCYMMKEK</PeptideSequence>
186 <Modification monoisotopicMassDelta="229.162932" location="0">
187 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
188 </Modification>
189 <Modification monoisotopicMassDelta="229.162932" location="1">
190 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
191 </Modification>
192 <Modification monoisotopicMassDelta="229.162932" location="3">
193 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
194 </Modification>
195 <Modification monoisotopicMassDelta="57.021464" location="4">
196 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
197 </Modification>
198 <Modification monoisotopicMassDelta="229.162932" location="8">
199 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
200 </Modification>
201 <Modification monoisotopicMassDelta="229.162932" location="10">
202 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
203 </Modification>
204 </Peptide>
205 <Peptide id="Pep5">
206 <PeptideSequence>SDKCMK</PeptideSequence>
207 <Modification monoisotopicMassDelta="229.162932" location="0">
208 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
209 </Modification>
210 <Modification monoisotopicMassDelta="229.162932" location="3">
211 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
212 </Modification>
213 <Modification monoisotopicMassDelta="57.021464" location="4">
214 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
215 </Modification>
216 <Modification monoisotopicMassDelta="15.994915" location="5">
217 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
218 </Modification>
219 <Modification monoisotopicMassDelta="229.162932" location="6">
220 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
221 </Modification>
222 </Peptide>
223 <Peptide id="Pep6">
224 <PeptideSequence>FDTPKPYLISKYLR</PeptideSequence>
225 <Modification monoisotopicMassDelta="229.162932" location="0">
226 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
227 </Modification>
228 <Modification monoisotopicMassDelta="229.162932" location="5">
229 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
230 </Modification>
231 <Modification monoisotopicMassDelta="229.162932" location="11">
232 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
233 </Modification>
234 </Peptide>
235 <Peptide id="Pep7">
236 <PeptideSequence>HMRCEYPKEEKGYGK</PeptideSequence>
237 <Modification monoisotopicMassDelta="229.162932" location="0">
238 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
239 </Modification>
240 <Modification monoisotopicMassDelta="15.994915" location="2">
241 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
242 </Modification>
243 <Modification monoisotopicMassDelta="57.021464" location="4">
244 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
245 </Modification>
246 <Modification monoisotopicMassDelta="229.162932" location="8">
247 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
248 </Modification>
249 <Modification monoisotopicMassDelta="229.162932" location="11">
250 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
251 </Modification>
252 <Modification monoisotopicMassDelta="229.162932" location="15">
253 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
254 </Modification>
255 </Peptide>
256 <Peptide id="Pep8">
257 <PeptideSequence>KMKYCFALVTSYESTR</PeptideSequence>
258 <Modification monoisotopicMassDelta="229.162932" location="0">
259 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
260 </Modification>
261 <Modification monoisotopicMassDelta="229.162932" location="1">
262 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
263 </Modification>
264 <Modification monoisotopicMassDelta="15.994915" location="2">
265 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
266 </Modification>
267 <Modification monoisotopicMassDelta="229.162932" location="3">
268 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
269 </Modification>
270 <Modification monoisotopicMassDelta="57.021464" location="5">
271 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
272 </Modification>
273 </Peptide>
274 <Peptide id="Pep9">
275 <PeptideSequence>NCKKNNCTGHVCLCR</PeptideSequence>
276 <Modification monoisotopicMassDelta="229.162932" location="0">
277 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
278 </Modification>
279 <Modification monoisotopicMassDelta="57.021464" location="2">
280 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
281 </Modification>
282 <Modification monoisotopicMassDelta="229.162932" location="3">
283 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
284 </Modification>
285 <Modification monoisotopicMassDelta="229.162932" location="4">
286 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
287 </Modification>
288 <Modification monoisotopicMassDelta="57.021464" location="7">
289 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
290 </Modification>
291 <Modification monoisotopicMassDelta="57.021464" location="12">
292 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
293 </Modification>
294 <Modification monoisotopicMassDelta="57.021464" location="14">
295 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
296 </Modification>
297 </Peptide>
298 <Peptide id="Pep10">
299 <PeptideSequence>VYRKADNCQQQYLLNQSQLQFLGDEVSQQR</PeptideSequence>
300 <Modification monoisotopicMassDelta="229.162932" location="0">
301 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
302 </Modification>
303 <Modification monoisotopicMassDelta="229.162932" location="4">
304 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
305 </Modification>
306 <Modification monoisotopicMassDelta="57.021464" location="8">
307 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
308 </Modification>
309 </Peptide>
310 <Peptide id="Pep11">
311 <PeptideSequence>QCWICKMCEDHVTK</PeptideSequence>
312 <Modification monoisotopicMassDelta="229.162932" location="0">
313 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
314 </Modification>
315 <Modification monoisotopicMassDelta="57.021464" location="2">
316 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
317 </Modification>
318 <Modification monoisotopicMassDelta="57.021464" location="5">
319 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
320 </Modification>
321 <Modification monoisotopicMassDelta="229.162932" location="6">
322 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
323 </Modification>
324 <Modification monoisotopicMassDelta="15.994915" location="7">
325 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
326 </Modification>
327 <Modification monoisotopicMassDelta="57.021464" location="8">
328 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
329 </Modification>
330 <Modification monoisotopicMassDelta="229.162932" location="14">
331 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
332 </Modification>
333 </Peptide>
334 <Peptide id="Pep12">
335 <PeptideSequence>KSELYEEDYMYDTK</PeptideSequence>
336 <Modification monoisotopicMassDelta="229.162932" location="0">
337 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
338 </Modification>
339 <Modification monoisotopicMassDelta="229.162932" location="1">
340 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
341 </Modification>
342 <Modification monoisotopicMassDelta="229.162932" location="14">
343 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
344 </Modification>
345 </Peptide>
346 <Peptide id="Pep13">
347 <PeptideSequence>LRPAFRQCCYELHAGELGWYIMENYFSLECMRR</PeptideSequence>
348 <Modification monoisotopicMassDelta="229.162932" location="0">
349 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
350 </Modification>
351 <Modification monoisotopicMassDelta="57.021464" location="8">
352 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
353 </Modification>
354 <Modification monoisotopicMassDelta="57.021464" location="9">
355 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
356 </Modification>
357 <Modification monoisotopicMassDelta="57.021464" location="30">
358 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
359 </Modification>
360 <Modification monoisotopicMassDelta="15.994915" location="31">
361 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
362 </Modification>
363 </Peptide>
364 <Peptide id="Pep14">
365 <PeptideSequence>CCSSQCCSSGCGSSFCCPK</PeptideSequence>
366 <Modification monoisotopicMassDelta="229.162932" location="0">
367 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
368 </Modification>
369 <Modification monoisotopicMassDelta="57.021464" location="1">
370 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
371 </Modification>
372 <Modification monoisotopicMassDelta="57.021464" location="2">
373 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
374 </Modification>
375 <Modification monoisotopicMassDelta="57.021464" location="6">
376 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
377 </Modification>
378 <Modification monoisotopicMassDelta="57.021464" location="7">
379 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
380 </Modification>
381 <Modification monoisotopicMassDelta="57.021464" location="11">
382 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
383 </Modification>
384 <Modification monoisotopicMassDelta="57.021464" location="16">
385 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
386 </Modification>
387 <Modification monoisotopicMassDelta="57.021464" location="17">
388 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
389 </Modification>
390 <Modification monoisotopicMassDelta="229.162932" location="19">
391 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
392 </Modification>
393 </Peptide>
394 <PeptideEvidence isDecoy="false" post="G" pre="K" end="345" start="323" peptide_ref="Pep1" dBSequence_ref="DBSeq10384886" id="PepEv_10385208_1_323"/>
395 <PeptideEvidence isDecoy="false" post="G" pre="K" end="345" start="323" peptide_ref="Pep1" dBSequence_ref="DBSeq10386358" id="PepEv_10386680_1_323"/>
396 <PeptideEvidence isDecoy="false" post="G" pre="K" end="345" start="323" peptide_ref="Pep1" dBSequence_ref="DBSeq37935494" id="PepEv_37935816_1_323"/>
397 <PeptideEvidence isDecoy="false" post="G" pre="K" end="345" start="323" peptide_ref="Pep1" dBSequence_ref="DBSeq37936966" id="PepEv_37937288_1_323"/>
398 <PeptideEvidence isDecoy="false" post="E" pre="K" end="23" start="16" peptide_ref="Pep2" dBSequence_ref="DBSeq34794905" id="PepEv_34794920_2_16"/>
399 <PeptideEvidence isDecoy="false" post="K" pre="K" end="325" start="318" peptide_ref="Pep3" dBSequence_ref="DBSeq9617798" id="PepEv_9618115_3_318"/>
400 <PeptideEvidence isDecoy="false" post="K" pre="K" end="305" start="298" peptide_ref="Pep3" dBSequence_ref="DBSeq9618818" id="PepEv_9619115_3_298"/>
401 <PeptideEvidence isDecoy="false" post="I" pre="K" end="402" start="393" peptide_ref="Pep4" dBSequence_ref="DBSeq17446714" id="PepEv_17447106_4_393"/>
402 <PeptideEvidence isDecoy="false" post="I" pre="K" end="416" start="407" peptide_ref="Pep4" dBSequence_ref="DBSeq17447862" id="PepEv_17448268_4_407"/>
403 <PeptideEvidence isDecoy="false" post="P" pre="R" end="649" start="644" peptide_ref="Pep5" dBSequence_ref="DBSeq15384937" id="PepEv_15385580_5_644"/>
404 <PeptideEvidence isDecoy="false" post="P" pre="R" end="649" start="644" peptide_ref="Pep5" dBSequence_ref="DBSeq15386299" id="PepEv_15386942_5_644"/>
405 <PeptideEvidence isDecoy="false" post="P" pre="R" end="649" start="644" peptide_ref="Pep5" dBSequence_ref="DBSeq15387661" id="PepEv_15388304_5_644"/>
406 <PeptideEvidence isDecoy="false" post="P" pre="R" end="649" start="644" peptide_ref="Pep5" dBSequence_ref="DBSeq15389246" id="PepEv_15389889_5_644"/>
407 <PeptideEvidence isDecoy="false" post="Q" pre="R" end="408" start="395" peptide_ref="Pep6" dBSequence_ref="DBSeq33076469" id="PepEv_33076863_6_395"/>
408 <PeptideEvidence isDecoy="false" post="Q" pre="R" end="408" start="395" peptide_ref="Pep6" dBSequence_ref="DBSeq33078011" id="PepEv_33078405_6_395"/>
409 <PeptideEvidence isDecoy="false" post="Q" pre="R" end="131" start="118" peptide_ref="Pep6" dBSequence_ref="DBSeq33079238" id="PepEv_33079355_6_118"/>
410 <PeptideEvidence isDecoy="false" post="H" pre="R" end="450" start="436" peptide_ref="Pep7" dBSequence_ref="DBSeq15936872" id="PepEv_15937307_7_436"/>
411 <PeptideEvidence isDecoy="false" post="H" pre="R" end="485" start="471" peptide_ref="Pep7" dBSequence_ref="DBSeq15937511" id="PepEv_15937981_7_471"/>
412 <PeptideEvidence isDecoy="false" post="K" pre="K" end="57" start="42" peptide_ref="Pep8" dBSequence_ref="DBSeq14626897" id="PepEv_14626938_8_42"/>
413 <PeptideEvidence isDecoy="false" post="C" pre="R" end="802" start="788" peptide_ref="Pep9" dBSequence_ref="DBSeq1785704" id="PepEv_1786491_9_788"/>
414 <PeptideEvidence isDecoy="false" post="K" pre="K" end="794" start="765" peptide_ref="Pep10" dBSequence_ref="DBSeq18923735" id="PepEv_18924499_10_765"/>
415 <PeptideEvidence isDecoy="false" post="L" pre="R" end="169" start="156" peptide_ref="Pep11" dBSequence_ref="DBSeq14136392" id="PepEv_14136547_11_156"/>
416 <PeptideEvidence isDecoy="false" post="L" pre="R" end="113" start="100" peptide_ref="Pep11" dBSequence_ref="DBSeq14137138" id="PepEv_14137237_11_100"/>
417 <PeptideEvidence isDecoy="false" post="I" pre="K" end="3680" start="3667" peptide_ref="Pep12" dBSequence_ref="DBSeq25732282" id="PepEv_25735948_12_3667"/>
418 <PeptideEvidence isDecoy="false" post="D" pre="K" end="115" start="83" peptide_ref="Pep13" dBSequence_ref="DBSeq20420738" id="PepEv_20420820_13_83"/>
419 <PeptideEvidence isDecoy="false" post="D" pre="K" end="115" start="83" peptide_ref="Pep13" dBSequence_ref="DBSeq20421175" id="PepEv_20421257_13_83"/>
420 <PeptideEvidence isDecoy="false" post="C" pre="K" end="212" start="194" peptide_ref="Pep14" dBSequence_ref="DBSeq5474626" id="PepEv_5474819_14_194"/>
421 <PeptideEvidence isDecoy="false" post="C" pre="K" end="203" start="185" peptide_ref="Pep14" dBSequence_ref="DBSeq5474855" id="PepEv_5475039_14_185"/>
422 <PeptideEvidence isDecoy="false" post="C" pre="K" end="212" start="194" peptide_ref="Pep14" dBSequence_ref="DBSeq28350267" id="PepEv_28350460_14_194"/>
423 <PeptideEvidence isDecoy="false" post="C" pre="K" end="203" start="185" peptide_ref="Pep14" dBSequence_ref="DBSeq28350496" id="PepEv_28350680_14_185"/>
424 </SequenceCollection>
425 <AnalysisCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
426 <SpectrumIdentification spectrumIdentificationList_ref="SI_LIST_1" spectrumIdentificationProtocol_ref="SearchProtocol_1" id="SpecIdent_1">
427 <InputSpectra spectraData_ref="SID_1"/>
428 <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/>
429 </SpectrumIdentification>
430 </AnalysisCollection>
431 <AnalysisProtocolCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
432 <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1">
433 <SearchType>
434 <cvParam accession="MS:1001083" cvRef="PSI-MS" name="ms-ms search"/>
435 </SearchType>
436 <AdditionalSearchParams>
437 <cvParam accession="MS:1001211" cvRef="PSI-MS" name="parent mass type mono"/>
438 <cvParam accession="MS:1001256" cvRef="PSI-MS" name="fragment mass type mono"/>
439 <userParam value="false" name="TargetDecoyApproach"/>
440 <userParam value="0" name="MinIsotopeError"/>
441 <userParam value="1" name="MaxIsotopeError"/>
442 <userParam value="HCD" name="FragmentMethod"/>
443 <userParam value="QExactive" name="Instrument"/>
444 <userParam value="TMT" name="Protocol"/>
445 <userParam value="2" name="NumTolerableTermini"/>
446 <userParam value="1" name="NumMatchesPerSpec"/>
447 <userParam value="2" name="MaxNumModifications"/>
448 <userParam value="6" name="MinPepLength"/>
449 <userParam value="50" name="MaxPepLength"/>
450 <userParam value="2" name="MinCharge"/>
451 <userParam value="6" name="MaxCharge"/>
452 </AdditionalSearchParams>
453 <ModificationParams>
454 <SearchModification residues="M" massDelta="15.994915" fixedMod="false">
455 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
456 </SearchModification>
457 <SearchModification residues="C" massDelta="57.021465" fixedMod="true">
458 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
459 </SearchModification>
460 <SearchModification residues="." massDelta="229.16293" fixedMod="true">
461 <SpecificityRules>
462 <cvParam accession="MS:1001189" cvRef="PSI-MS" name="modification specificity N-term"/>
463 </SpecificityRules>
464 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
465 </SearchModification>
466 <SearchModification residues="K" massDelta="229.16293" fixedMod="true">
467 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
468 </SearchModification>
469 </ModificationParams>
470 <Enzymes>
471 <Enzyme missedCleavages="1000" semiSpecific="false" id="Tryp">
472 <EnzymeName>
473 <cvParam accession="MS:1001251" cvRef="PSI-MS" name="Trypsin"/>
474 </EnzymeName>
475 </Enzyme>
476 </Enzymes>
477 <ParentTolerance>
478 <cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance plus value"/>
479 <cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance minus value"/>
480 </ParentTolerance>
481 <Threshold>
482 <cvParam accession="MS:1001494" cvRef="PSI-MS" name="no threshold"/>
483 </Threshold>
484 </SpectrumIdentificationProtocol>
485 </AnalysisProtocolCollection>
486 <DataCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
487 <Inputs>
488 <SearchDatabase numDatabaseSequences="100778" location="/mnt/galaxy/data/job_working_directory/000/567/dbase.fasta" id="SearchDB_1">
489 <FileFormat>
490 <cvParam accession="MS:1001348" cvRef="PSI-MS" name="FASTA format"/>
491 </FileFormat>
492 <DatabaseName>
493 <userParam name="dbase.fasta"/>
494 </DatabaseName>
495 </SearchDatabase>
496 <SpectraData location="/tmp/tmpYrQpjc/dataset_651.dat.mzml" name="dataset_651.dat.mzml" id="SID_1">
497 <FileFormat>
498 <cvParam accession="MS:1000584" cvRef="PSI-MS" name="mzML file"/>
499 </FileFormat>
500 <SpectrumIDFormat>
501 <cvParam accession="MS:1000768" cvRef="PSI-MS" name="Thermo nativeID format"/>
502 </SpectrumIDFormat>
503 </SpectraData>
504 </Inputs>
505 <AnalysisData>
506 <SpectrumIdentificationList id="SI_LIST_1">
507 <FragmentationTable>
508 <Measure id="Measure_MZ">
509 <cvParam accession="MS:1001225" cvRef="PSI-MS" unitCvRef="PSI-MS" unitName="m/z" unitAccession="MS:1000040" name="product ion m/z"/>
510 </Measure>
511 </FragmentationTable>
512 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=114" id="SIR_14">
513 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep1" calculatedMassToCharge="1563.3004150390625" experimentalMassToCharge="1563.2900390625" chargeState="3" id="SII_14_1">
514 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10385208_1_323"/>
515 <PeptideEvidenceRef peptideEvidence_ref="PepEv_10386680_1_323"/>
516 <PeptideEvidenceRef peptideEvidence_ref="PepEv_37935816_1_323"/>
517 <PeptideEvidenceRef peptideEvidence_ref="PepEv_37937288_1_323"/>
518 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-80" name="MS-GF:RawScore"/>
519 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="21" name="MS-GF:DeNovoScore"/>
520 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.436431E-9" name="MS-GF:SpecEValue"/>
521 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.118822" name="MS-GF:EValue"/>
522 <userParam value="0" name="IsotopeError"/>
523 <userParam value="HCD" name="AssumedDissociationMethod"/>
524 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
525 <userParam value="0.0" name="NTermIonCurrentRatio"/>
526 <userParam value="0.0" name="CTermIonCurrentRatio"/>
527 <userParam value="35460.188" name="MS2IonCurrent"/>
528 </SpectrumIdentificationItem>
529 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="114" name="scan number(s)"/>
530 </SpectrumIdentificationResult>
531 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=119" id="SIR_19">
532 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep2" calculatedMassToCharge="513.1725463867188" experimentalMassToCharge="513.1763305664062" chargeState="5" id="SII_19_1">
533 <PeptideEvidenceRef peptideEvidence_ref="PepEv_34794920_2_16"/>
534 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/>
535 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="36" name="MS-GF:DeNovoScore"/>
536 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.3967498E-7" name="MS-GF:SpecEValue"/>
537 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.7166849" name="MS-GF:EValue"/>
538 <userParam value="0" name="IsotopeError"/>
539 <userParam value="HCD" name="AssumedDissociationMethod"/>
540 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
541 <userParam value="0.0" name="NTermIonCurrentRatio"/>
542 <userParam value="0.0" name="CTermIonCurrentRatio"/>
543 <userParam value="48651.457" name="MS2IonCurrent"/>
544 </SpectrumIdentificationItem>
545 <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep3" calculatedMassToCharge="513.1725463867188" experimentalMassToCharge="513.1763305664062" chargeState="5" id="SII_19_2">
546 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9618115_3_318"/>
547 <PeptideEvidenceRef peptideEvidence_ref="PepEv_9619115_3_298"/>
548 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/>
549 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="36" name="MS-GF:DeNovoScore"/>
550 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.3967498E-7" name="MS-GF:SpecEValue"/>
551 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.7166849" name="MS-GF:EValue"/>
552 <userParam value="0" name="IsotopeError"/>
553 <userParam value="HCD" name="AssumedDissociationMethod"/>
554 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
555 <userParam value="0.0" name="NTermIonCurrentRatio"/>
556 <userParam value="0.0" name="CTermIonCurrentRatio"/>
557 <userParam value="48651.457" name="MS2IonCurrent"/>
558 </SpectrumIdentificationItem>
559 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="119" name="scan number(s)"/>
560 </SpectrumIdentificationResult>
561 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=161" id="SIR_61">
562 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep4" calculatedMassToCharge="1260.7398681640625" experimentalMassToCharge="1260.72998046875" chargeState="2" id="SII_61_1">
563 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17447106_4_393"/>
564 <PeptideEvidenceRef peptideEvidence_ref="PepEv_17448268_4_407"/>
565 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-45" name="MS-GF:RawScore"/>
566 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="1" name="MS-GF:DeNovoScore"/>
567 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.720604E-7" name="MS-GF:SpecEValue"/>
568 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="7.2268076" name="MS-GF:EValue"/>
569 <userParam value="0" name="IsotopeError"/>
570 <userParam value="HCD" name="AssumedDissociationMethod"/>
571 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
572 <userParam value="0.0" name="NTermIonCurrentRatio"/>
573 <userParam value="0.0" name="CTermIonCurrentRatio"/>
574 <userParam value="30739.516" name="MS2IonCurrent"/>
575 </SpectrumIdentificationItem>
576 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="161" name="scan number(s)"/>
577 </SpectrumIdentificationResult>
578 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=108" id="SIR_8">
579 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep5" calculatedMassToCharge="491.2787170410156" experimentalMassToCharge="491.2799987792969" chargeState="3" id="SII_8_1">
580 <PeptideEvidenceRef peptideEvidence_ref="PepEv_15385580_5_644"/>
581 <PeptideEvidenceRef peptideEvidence_ref="PepEv_15386942_5_644"/>
582 <PeptideEvidenceRef peptideEvidence_ref="PepEv_15388304_5_644"/>
583 <PeptideEvidenceRef peptideEvidence_ref="PepEv_15389889_5_644"/>
584 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/>
585 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="2" name="MS-GF:DeNovoScore"/>
586 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="6.6787294E-7" name="MS-GF:SpecEValue"/>
587 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="7.7167664" name="MS-GF:EValue"/>
588 <userParam value="0" name="IsotopeError"/>
589 <userParam value="HCD" name="AssumedDissociationMethod"/>
590 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
591 <userParam value="0.0" name="NTermIonCurrentRatio"/>
592 <userParam value="0.0" name="CTermIonCurrentRatio"/>
593 <userParam value="63820.363" name="MS2IonCurrent"/>
594 </SpectrumIdentificationItem>
595 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="108" name="scan number(s)"/>
596 </SpectrumIdentificationResult>
597 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=127" id="SIR_27">
598 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep6" calculatedMassToCharge="1214.732177734375" experimentalMassToCharge="1214.72705078125" chargeState="2" id="SII_27_1">
599 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33076863_6_395"/>
600 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33078405_6_395"/>
601 <PeptideEvidenceRef peptideEvidence_ref="PepEv_33079355_6_118"/>
602 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-43" name="MS-GF:RawScore"/>
603 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="10" name="MS-GF:DeNovoScore"/>
604 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="6.880694E-7" name="MS-GF:SpecEValue"/>
605 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9.058709" name="MS-GF:EValue"/>
606 <userParam value="0" name="IsotopeError"/>
607 <userParam value="HCD" name="AssumedDissociationMethod"/>
608 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
609 <userParam value="0.0" name="NTermIonCurrentRatio"/>
610 <userParam value="0.0" name="CTermIonCurrentRatio"/>
611 <userParam value="23307.105" name="MS2IonCurrent"/>
612 </SpectrumIdentificationItem>
613 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="127" name="scan number(s)"/>
614 </SpectrumIdentificationResult>
615 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=164" id="SIR_64">
616 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep7" calculatedMassToCharge="948.8483276367188" experimentalMassToCharge="948.8460083007812" chargeState="3" id="SII_64_1">
617 <PeptideEvidenceRef peptideEvidence_ref="PepEv_15937307_7_436"/>
618 <PeptideEvidenceRef peptideEvidence_ref="PepEv_15937981_7_471"/>
619 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-47" name="MS-GF:RawScore"/>
620 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="24" name="MS-GF:DeNovoScore"/>
621 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.6529262E-6" name="MS-GF:SpecEValue"/>
622 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="21.9529" name="MS-GF:EValue"/>
623 <userParam value="0" name="IsotopeError"/>
624 <userParam value="HCD" name="AssumedDissociationMethod"/>
625 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
626 <userParam value="0.0" name="NTermIonCurrentRatio"/>
627 <userParam value="0.0" name="CTermIonCurrentRatio"/>
628 <userParam value="31451.035" name="MS2IonCurrent"/>
629 </SpectrumIdentificationItem>
630 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="164" name="scan number(s)"/>
631 </SpectrumIdentificationResult>
632 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=170" id="SIR_70">
633 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep8" calculatedMassToCharge="1344.2288818359375" experimentalMassToCharge="1344.721923828125" chargeState="2" id="SII_70_1">
634 <PeptideEvidenceRef peptideEvidence_ref="PepEv_14626938_8_42"/>
635 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-58" name="MS-GF:RawScore"/>
636 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="0" name="MS-GF:DeNovoScore"/>
637 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.5025913E-6" name="MS-GF:SpecEValue"/>
638 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="33.51599" name="MS-GF:EValue"/>
639 <userParam value="1" name="IsotopeError"/>
640 <userParam value="HCD" name="AssumedDissociationMethod"/>
641 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
642 <userParam value="0.0" name="NTermIonCurrentRatio"/>
643 <userParam value="0.0" name="CTermIonCurrentRatio"/>
644 <userParam value="25516.688" name="MS2IonCurrent"/>
645 </SpectrumIdentificationItem>
646 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="170" name="scan number(s)"/>
647 </SpectrumIdentificationResult>
648 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=156" id="SIR_56">
649 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep9" calculatedMassToCharge="1304.66845703125" experimentalMassToCharge="1304.6722412109375" chargeState="2" id="SII_56_1">
650 <PeptideEvidenceRef peptideEvidence_ref="PepEv_1786491_9_788"/>
651 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-56" name="MS-GF:RawScore"/>
652 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="4" name="MS-GF:DeNovoScore"/>
653 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.2470991E-6" name="MS-GF:SpecEValue"/>
654 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="43.125484" name="MS-GF:EValue"/>
655 <userParam value="0" name="IsotopeError"/>
656 <userParam value="HCD" name="AssumedDissociationMethod"/>
657 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
658 <userParam value="0.0" name="NTermIonCurrentRatio"/>
659 <userParam value="0.0" name="CTermIonCurrentRatio"/>
660 <userParam value="23753.205" name="MS2IonCurrent"/>
661 </SpectrumIdentificationItem>
662 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="156" name="scan number(s)"/>
663 </SpectrumIdentificationResult>
664 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=201" id="SIR_101">
665 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep10" calculatedMassToCharge="1372.3759765625" experimentalMassToCharge="1372.7095947265625" chargeState="3" id="SII_101_1">
666 <PeptideEvidenceRef peptideEvidence_ref="PepEv_18924499_10_765"/>
667 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-91" name="MS-GF:RawScore"/>
668 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="25" name="MS-GF:DeNovoScore"/>
669 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="9.082585E-6" name="MS-GF:SpecEValue"/>
670 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="133.41512" name="MS-GF:EValue"/>
671 <userParam value="1" name="IsotopeError"/>
672 <userParam value="HCD" name="AssumedDissociationMethod"/>
673 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
674 <userParam value="0.0" name="NTermIonCurrentRatio"/>
675 <userParam value="0.0" name="CTermIonCurrentRatio"/>
676 <userParam value="30976.94" name="MS2IonCurrent"/>
677 </SpectrumIdentificationItem>
678 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="201" name="scan number(s)"/>
679 </SpectrumIdentificationResult>
680 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=199" id="SIR_99">
681 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep11" calculatedMassToCharge="1299.6488037109375" experimentalMassToCharge="1300.1600341796875" chargeState="2" id="SII_99_1">
682 <PeptideEvidenceRef peptideEvidence_ref="PepEv_14136547_11_156"/>
683 <PeptideEvidenceRef peptideEvidence_ref="PepEv_14137237_11_100"/>
684 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-62" name="MS-GF:RawScore"/>
685 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="5" name="MS-GF:DeNovoScore"/>
686 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.6317841E-5" name="MS-GF:SpecEValue"/>
687 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="214.83092" name="MS-GF:EValue"/>
688 <userParam value="1" name="IsotopeError"/>
689 <userParam value="HCD" name="AssumedDissociationMethod"/>
690 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
691 <userParam value="0.0" name="NTermIonCurrentRatio"/>
692 <userParam value="0.0" name="CTermIonCurrentRatio"/>
693 <userParam value="31783.168" name="MS2IonCurrent"/>
694 </SpectrumIdentificationItem>
695 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="199" name="scan number(s)"/>
696 </SpectrumIdentificationResult>
697 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=103" id="SIR_3">
698 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep12" calculatedMassToCharge="1251.139892578125" experimentalMassToCharge="1251.6300048828125" chargeState="2" id="SII_3_1">
699 <PeptideEvidenceRef peptideEvidence_ref="PepEv_25735948_12_3667"/>
700 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-57" name="MS-GF:RawScore"/>
701 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="25" name="MS-GF:DeNovoScore"/>
702 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.3448486E-5" name="MS-GF:SpecEValue"/>
703 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="703.6707" name="MS-GF:EValue"/>
704 <userParam value="1" name="IsotopeError"/>
705 <userParam value="HCD" name="AssumedDissociationMethod"/>
706 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
707 <userParam value="0.0" name="NTermIonCurrentRatio"/>
708 <userParam value="0.0" name="CTermIonCurrentRatio"/>
709 <userParam value="28221.162" name="MS2IonCurrent"/>
710 </SpectrumIdentificationItem>
711 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="103" name="scan number(s)"/>
712 </SpectrumIdentificationResult>
713 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=180" id="SIR_80">
714 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep13" calculatedMassToCharge="1501.0423583984375" experimentalMassToCharge="1501.3699951171875" chargeState="3" id="SII_80_1">
715 <PeptideEvidenceRef peptideEvidence_ref="PepEv_20420820_13_83"/>
716 <PeptideEvidenceRef peptideEvidence_ref="PepEv_20421257_13_83"/>
717 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-131" name="MS-GF:RawScore"/>
718 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="22" name="MS-GF:DeNovoScore"/>
719 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="6.3713966E-4" name="MS-GF:SpecEValue"/>
720 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9514.242" name="MS-GF:EValue"/>
721 <userParam value="1" name="IsotopeError"/>
722 <userParam value="HCD" name="AssumedDissociationMethod"/>
723 <userParam value="0.039110184" name="ExplainedIonCurrentRatio"/>
724 <userParam value="0.0" name="NTermIonCurrentRatio"/>
725 <userParam value="0.039110184" name="CTermIonCurrentRatio"/>
726 <userParam value="35867.156" name="MS2IonCurrent"/>
727 <userParam value="1" name="NumMatchedMainIons"/>
728 <userParam value="1.7866856" name="MeanErrorAll"/>
729 <userParam value="0.0" name="StdevErrorAll"/>
730 <userParam value="1.7866856" name="MeanErrorTop7"/>
731 <userParam value="0.0" name="StdevErrorTop7"/>
732 <userParam value="1.7866856" name="MeanRelErrorAll"/>
733 <userParam value="0.0" name="StdevRelErrorAll"/>
734 <userParam value="1.7866856" name="MeanRelErrorTop7"/>
735 <userParam value="0.0" name="StdevRelErrorTop7"/>
736 </SpectrumIdentificationItem>
737 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="180" name="scan number(s)"/>
738 </SpectrumIdentificationResult>
739 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=110" id="SIR_10">
740 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep14" calculatedMassToCharge="1367.5377197265625" experimentalMassToCharge="1368.0465087890625" chargeState="2" id="SII_10_1">
741 <PeptideEvidenceRef peptideEvidence_ref="PepEv_5474819_14_194"/>
742 <PeptideEvidenceRef peptideEvidence_ref="PepEv_5475039_14_185"/>
743 <PeptideEvidenceRef peptideEvidence_ref="PepEv_28350460_14_194"/>
744 <PeptideEvidenceRef peptideEvidence_ref="PepEv_28350680_14_185"/>
745 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-110" name="MS-GF:RawScore"/>
746 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="13" name="MS-GF:DeNovoScore"/>
747 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.004133948" name="MS-GF:SpecEValue"/>
748 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="56653.13" name="MS-GF:EValue"/>
749 <userParam value="1" name="IsotopeError"/>
750 <userParam value="HCD" name="AssumedDissociationMethod"/>
751 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
752 <userParam value="0.0" name="NTermIonCurrentRatio"/>
753 <userParam value="0.0" name="CTermIonCurrentRatio"/>
754 <userParam value="30227.537" name="MS2IonCurrent"/>
755 </SpectrumIdentificationItem>
756 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="110" name="scan number(s)"/>
757 </SpectrumIdentificationResult>
758 </SpectrumIdentificationList>
759 </AnalysisData>
760 </DataCollection>
761 </MzIdentML>