Mercurial > repos > galaxyp > percolator
diff test-data/decoy.mzid @ 0:3a49065a05d6 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit b4871f9659a924a68430aed3a93f4f9bad733fd6
| author | galaxyp |
|---|---|
| date | Wed, 07 Dec 2016 16:43:51 -0500 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/decoy.mzid Wed Dec 07 16:43:51 2016 -0500 @@ -0,0 +1,761 @@ +<?xml version="1.0" encoding="UTF-8"?> +<MzIdentML id="MS-GF+" version="1.1.0" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2016-04-08T12:44:47" > +<cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> + <cv id="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" version="3.30.0" fullName="PSI-MS"/> + <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/> + <cv id="UO" uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo" fullName="UNIT-ONTOLOGY"/> +</cvList> +<AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> + <AnalysisSoftware version="Beta (v10072)" name="MS-GF+" id="ID_software"> + <SoftwareName> + <cvParam accession="MS:1002048" cvRef="PSI-MS" name="MS-GF+"/> + </SoftwareName> + </AnalysisSoftware> +</AnalysisSoftwareList> +<SequenceCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> + <DBSequence accession="decoy_ENSP00000345809" searchDatabase_ref="SearchDB_1" length="1029" id="DBSeq10384886"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000345809 gene:decoy_ENSG00000186448 transcript:decoy_ENST00000344387" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000379370" searchDatabase_ref="SearchDB_1" length="1029" id="DBSeq10386358"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000379370 gene:decoy_ENSG00000186448 transcript:decoy_ENST00000396058" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000485709" searchDatabase_ref="SearchDB_1" length="1029" id="DBSeq37935494"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000485709 gene:decoy_ENSG00000281709 transcript:decoy_ENST00000628172" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000486739" searchDatabase_ref="SearchDB_1" length="1029" id="DBSeq37936966"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000486739 gene:decoy_ENSG00000281709 transcript:decoy_ENST00000627845" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000432575" searchDatabase_ref="SearchDB_1" length="213" id="DBSeq34794905"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000432575 gene:decoy_ENSG00000254505 transcript:decoy_ENST00000533011" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000364956" searchDatabase_ref="SearchDB_1" length="1019" id="DBSeq9617798"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000364956 gene:decoy_ENSG00000116786 transcript:decoy_ENST00000375799" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000364950" searchDatabase_ref="SearchDB_1" length="999" id="DBSeq9618818"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000364950 gene:decoy_ENSG00000116786 transcript:decoy_ENST00000375793" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000287598" searchDatabase_ref="SearchDB_1" length="1050" id="DBSeq17446714"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000287598 gene:decoy_ENSG00000156970 transcript:decoy_ENST00000287598" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000398470" searchDatabase_ref="SearchDB_1" length="1064" id="DBSeq17447862"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000398470 gene:decoy_ENSG00000156970 transcript:decoy_ENST00000412359" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000220244" searchDatabase_ref="SearchDB_1" length="1361" id="DBSeq15384937"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000220244 gene:decoy_ENSG00000103888 transcript:decoy_ENST00000220244" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000378177" searchDatabase_ref="SearchDB_1" length="1361" id="DBSeq15386299"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000378177 gene:decoy_ENSG00000103888 transcript:decoy_ENST00000394685" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000348583" searchDatabase_ref="SearchDB_1" length="1361" id="DBSeq15387661"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000348583 gene:decoy_ENSG00000103888 transcript:decoy_ENST00000356249" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000480324" searchDatabase_ref="SearchDB_1" length="992" id="DBSeq15389246"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000480324 gene:decoy_ENSG00000103888 transcript:decoy_ENST00000611615" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000416508" searchDatabase_ref="SearchDB_1" length="1226" id="DBSeq33076469"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000416508 gene:decoy_ENSG00000133657 transcript:decoy_ENST00000439040" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000256031" searchDatabase_ref="SearchDB_1" length="1226" id="DBSeq33078011"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000256031 gene:decoy_ENSG00000133657 transcript:decoy_ENST00000256031" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000482200" searchDatabase_ref="SearchDB_1" length="701" id="DBSeq33079238"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000482200 gene:decoy_ENSG00000133657 transcript:decoy_ENST00000619199" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000393416" searchDatabase_ref="SearchDB_1" length="638" id="DBSeq15936872"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000393416 gene:decoy_ENSG00000197647 transcript:decoy_ENST00000419886" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000339767" searchDatabase_ref="SearchDB_1" length="673" id="DBSeq15937511"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000339767 gene:decoy_ENSG00000197647 transcript:decoy_ENST00000344980" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000359524" searchDatabase_ref="SearchDB_1" length="72" id="DBSeq14626897"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000359524 gene:decoy_ENSG00000203923 transcript:decoy_ENST00000370493" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000373539" searchDatabase_ref="SearchDB_1" length="2551" id="DBSeq1785704"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000373539 gene:decoy_ENSG00000136011 transcript:decoy_ENST00000388887" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000467740" searchDatabase_ref="SearchDB_1" length="917" id="DBSeq18923735"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000467740 gene:decoy_ENSG00000181626 transcript:decoy_ENST00000587848" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000284061" searchDatabase_ref="SearchDB_1" length="567" id="DBSeq14136392"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000284061 gene:decoy_ENSG00000153933 transcript:decoy_ENST00000284061" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000458493" searchDatabase_ref="SearchDB_1" length="456" id="DBSeq14137138"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000458493 gene:decoy_ENSG00000153933 transcript:decoy_ENST00000572944" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000354117" searchDatabase_ref="SearchDB_1" length="5604" id="DBSeq25732282"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000354117 gene:decoy_ENSG00000155657 transcript:decoy_ENST00000360870" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000304127" searchDatabase_ref="SearchDB_1" length="436" id="DBSeq20420738"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000304127 gene:decoy_ENSG00000171126 transcript:decoy_ENST00000306078" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000378424" searchDatabase_ref="SearchDB_1" length="425" id="DBSeq20421175"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000378424 gene:decoy_ENSG00000171126 transcript:decoy_ENST00000394973" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000382590" searchDatabase_ref="SearchDB_1" length="228" id="DBSeq5474626"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000382590 gene:decoy_ENSG00000241598 transcript:decoy_ENST00000399682" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000480265" searchDatabase_ref="SearchDB_1" length="219" id="DBSeq5474855"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000480265 gene:decoy_ENSG00000241598 transcript:decoy_ENST00000616115" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000486418" searchDatabase_ref="SearchDB_1" length="228" id="DBSeq28350267"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000486418 gene:decoy_ENSG00000277068 transcript:decoy_ENST00000629556" name="protein description"/> + </DBSequence> + <DBSequence accession="decoy_ENSP00000478428" searchDatabase_ref="SearchDB_1" length="219" id="DBSeq28350496"> + <cvParam accession="MS:1001088" cvRef="PSI-MS" value="decoy_ENSP00000478428 gene:decoy_ENSG00000277068 transcript:decoy_ENST00000617720" name="protein description"/> + </DBSequence> + <Peptide id="Pep1"> + <PeptideSequence>KECLSVRDKKKREPPTKQGQKWK</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="1"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="3"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="9"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="10"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="11"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="17"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="21"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="23"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + </Peptide> + <Peptide id="Pep2"> + <PeptideSequence>KKKKGLKK</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="1"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="2"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="3"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="4"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="7"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="8"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + </Peptide> + <Peptide id="Pep3"> + <PeptideSequence>KKKGIKKK</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="1"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="2"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="3"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="6"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="7"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="8"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + </Peptide> + <Peptide id="Pep4"> + <PeptideSequence>KEKCYMMKEK</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="1"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="3"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="4"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="8"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="10"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + </Peptide> + <Peptide id="Pep5"> + <PeptideSequence>SDKCMK</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="3"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="4"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="15.994915" location="5"> + <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="6"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + </Peptide> + <Peptide id="Pep6"> + <PeptideSequence>FDTPKPYLISKYLR</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="5"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="11"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + </Peptide> + <Peptide id="Pep7"> + <PeptideSequence>HMRCEYPKEEKGYGK</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="15.994915" location="2"> + <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="4"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="8"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="11"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="15"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + </Peptide> + <Peptide id="Pep8"> + <PeptideSequence>KMKYCFALVTSYESTR</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="1"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="15.994915" location="2"> + <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="3"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="5"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + </Peptide> + <Peptide id="Pep9"> + <PeptideSequence>NCKKNNCTGHVCLCR</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="2"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="3"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="4"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="7"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="12"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="14"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + </Peptide> + <Peptide id="Pep10"> + <PeptideSequence>VYRKADNCQQQYLLNQSQLQFLGDEVSQQR</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="4"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="8"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + </Peptide> + <Peptide id="Pep11"> + <PeptideSequence>QCWICKMCEDHVTK</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="2"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="5"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="6"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="15.994915" location="7"> + <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="8"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="14"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + </Peptide> + <Peptide id="Pep12"> + <PeptideSequence>KSELYEEDYMYDTK</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="1"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="14"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + </Peptide> + <Peptide id="Pep13"> + <PeptideSequence>LRPAFRQCCYELHAGELGWYIMENYFSLECMRR</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="8"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="9"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="30"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="15.994915" location="31"> + <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/> + </Modification> + </Peptide> + <Peptide id="Pep14"> + <PeptideSequence>CCSSQCCSSGCGSSFCCPK</PeptideSequence> + <Modification monoisotopicMassDelta="229.162932" location="0"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="1"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="2"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="6"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="7"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="11"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="16"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="57.021464" location="17"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </Modification> + <Modification monoisotopicMassDelta="229.162932" location="19"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </Modification> + </Peptide> + <PeptideEvidence isDecoy="false" post="G" pre="K" end="345" start="323" peptide_ref="Pep1" dBSequence_ref="DBSeq10384886" id="PepEv_10385208_1_323"/> + <PeptideEvidence isDecoy="false" post="G" pre="K" end="345" start="323" peptide_ref="Pep1" dBSequence_ref="DBSeq10386358" id="PepEv_10386680_1_323"/> + <PeptideEvidence isDecoy="false" post="G" pre="K" end="345" start="323" peptide_ref="Pep1" dBSequence_ref="DBSeq37935494" id="PepEv_37935816_1_323"/> + <PeptideEvidence isDecoy="false" post="G" pre="K" end="345" start="323" peptide_ref="Pep1" dBSequence_ref="DBSeq37936966" id="PepEv_37937288_1_323"/> + <PeptideEvidence isDecoy="false" post="E" pre="K" end="23" start="16" peptide_ref="Pep2" dBSequence_ref="DBSeq34794905" id="PepEv_34794920_2_16"/> + <PeptideEvidence isDecoy="false" post="K" pre="K" end="325" start="318" peptide_ref="Pep3" dBSequence_ref="DBSeq9617798" id="PepEv_9618115_3_318"/> + <PeptideEvidence isDecoy="false" post="K" pre="K" end="305" start="298" peptide_ref="Pep3" dBSequence_ref="DBSeq9618818" id="PepEv_9619115_3_298"/> + <PeptideEvidence isDecoy="false" post="I" pre="K" end="402" start="393" peptide_ref="Pep4" dBSequence_ref="DBSeq17446714" id="PepEv_17447106_4_393"/> + <PeptideEvidence isDecoy="false" post="I" pre="K" end="416" start="407" peptide_ref="Pep4" dBSequence_ref="DBSeq17447862" id="PepEv_17448268_4_407"/> + <PeptideEvidence isDecoy="false" post="P" pre="R" end="649" start="644" peptide_ref="Pep5" dBSequence_ref="DBSeq15384937" id="PepEv_15385580_5_644"/> + <PeptideEvidence isDecoy="false" post="P" pre="R" end="649" start="644" peptide_ref="Pep5" dBSequence_ref="DBSeq15386299" id="PepEv_15386942_5_644"/> + <PeptideEvidence isDecoy="false" post="P" pre="R" end="649" start="644" peptide_ref="Pep5" dBSequence_ref="DBSeq15387661" id="PepEv_15388304_5_644"/> + <PeptideEvidence isDecoy="false" post="P" pre="R" end="649" start="644" peptide_ref="Pep5" dBSequence_ref="DBSeq15389246" id="PepEv_15389889_5_644"/> + <PeptideEvidence isDecoy="false" post="Q" pre="R" end="408" start="395" peptide_ref="Pep6" dBSequence_ref="DBSeq33076469" id="PepEv_33076863_6_395"/> + <PeptideEvidence isDecoy="false" post="Q" pre="R" end="408" start="395" peptide_ref="Pep6" dBSequence_ref="DBSeq33078011" id="PepEv_33078405_6_395"/> + <PeptideEvidence isDecoy="false" post="Q" pre="R" end="131" start="118" peptide_ref="Pep6" dBSequence_ref="DBSeq33079238" id="PepEv_33079355_6_118"/> + <PeptideEvidence isDecoy="false" post="H" pre="R" end="450" start="436" peptide_ref="Pep7" dBSequence_ref="DBSeq15936872" id="PepEv_15937307_7_436"/> + <PeptideEvidence isDecoy="false" post="H" pre="R" end="485" start="471" peptide_ref="Pep7" dBSequence_ref="DBSeq15937511" id="PepEv_15937981_7_471"/> + <PeptideEvidence isDecoy="false" post="K" pre="K" end="57" start="42" peptide_ref="Pep8" dBSequence_ref="DBSeq14626897" id="PepEv_14626938_8_42"/> + <PeptideEvidence isDecoy="false" post="C" pre="R" end="802" start="788" peptide_ref="Pep9" dBSequence_ref="DBSeq1785704" id="PepEv_1786491_9_788"/> + <PeptideEvidence isDecoy="false" post="K" pre="K" end="794" start="765" peptide_ref="Pep10" dBSequence_ref="DBSeq18923735" id="PepEv_18924499_10_765"/> + <PeptideEvidence isDecoy="false" post="L" pre="R" end="169" start="156" peptide_ref="Pep11" dBSequence_ref="DBSeq14136392" id="PepEv_14136547_11_156"/> + <PeptideEvidence isDecoy="false" post="L" pre="R" end="113" start="100" peptide_ref="Pep11" dBSequence_ref="DBSeq14137138" id="PepEv_14137237_11_100"/> + <PeptideEvidence isDecoy="false" post="I" pre="K" end="3680" start="3667" peptide_ref="Pep12" dBSequence_ref="DBSeq25732282" id="PepEv_25735948_12_3667"/> + <PeptideEvidence isDecoy="false" post="D" pre="K" end="115" start="83" peptide_ref="Pep13" dBSequence_ref="DBSeq20420738" id="PepEv_20420820_13_83"/> + <PeptideEvidence isDecoy="false" post="D" pre="K" end="115" start="83" peptide_ref="Pep13" dBSequence_ref="DBSeq20421175" id="PepEv_20421257_13_83"/> + <PeptideEvidence isDecoy="false" post="C" pre="K" end="212" start="194" peptide_ref="Pep14" dBSequence_ref="DBSeq5474626" id="PepEv_5474819_14_194"/> + <PeptideEvidence isDecoy="false" post="C" pre="K" end="203" start="185" peptide_ref="Pep14" dBSequence_ref="DBSeq5474855" id="PepEv_5475039_14_185"/> + <PeptideEvidence isDecoy="false" post="C" pre="K" end="212" start="194" peptide_ref="Pep14" dBSequence_ref="DBSeq28350267" id="PepEv_28350460_14_194"/> + <PeptideEvidence isDecoy="false" post="C" pre="K" end="203" start="185" peptide_ref="Pep14" dBSequence_ref="DBSeq28350496" id="PepEv_28350680_14_185"/> +</SequenceCollection> +<AnalysisCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> + <SpectrumIdentification spectrumIdentificationList_ref="SI_LIST_1" spectrumIdentificationProtocol_ref="SearchProtocol_1" id="SpecIdent_1"> + <InputSpectra spectraData_ref="SID_1"/> + <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/> + </SpectrumIdentification> +</AnalysisCollection> +<AnalysisProtocolCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> + <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1"> + <SearchType> + <cvParam accession="MS:1001083" cvRef="PSI-MS" name="ms-ms search"/> + </SearchType> + <AdditionalSearchParams> + <cvParam accession="MS:1001211" cvRef="PSI-MS" name="parent mass type mono"/> + <cvParam accession="MS:1001256" cvRef="PSI-MS" name="fragment mass type mono"/> + <userParam value="false" name="TargetDecoyApproach"/> + <userParam value="0" name="MinIsotopeError"/> + <userParam value="1" name="MaxIsotopeError"/> + <userParam value="HCD" name="FragmentMethod"/> + <userParam value="QExactive" name="Instrument"/> + <userParam value="TMT" name="Protocol"/> + <userParam value="2" name="NumTolerableTermini"/> + <userParam value="1" name="NumMatchesPerSpec"/> + <userParam value="2" name="MaxNumModifications"/> + <userParam value="6" name="MinPepLength"/> + <userParam value="50" name="MaxPepLength"/> + <userParam value="2" name="MinCharge"/> + <userParam value="6" name="MaxCharge"/> + </AdditionalSearchParams> + <ModificationParams> + <SearchModification residues="M" massDelta="15.994915" fixedMod="false"> + <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/> + </SearchModification> + <SearchModification residues="C" massDelta="57.021465" fixedMod="true"> + <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> + </SearchModification> + <SearchModification residues="." massDelta="229.16293" fixedMod="true"> + <SpecificityRules> + <cvParam accession="MS:1001189" cvRef="PSI-MS" name="modification specificity N-term"/> + </SpecificityRules> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </SearchModification> + <SearchModification residues="K" massDelta="229.16293" fixedMod="true"> + <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> + </SearchModification> + </ModificationParams> + <Enzymes> + <Enzyme missedCleavages="1000" semiSpecific="false" id="Tryp"> + <EnzymeName> + <cvParam accession="MS:1001251" cvRef="PSI-MS" name="Trypsin"/> + </EnzymeName> + </Enzyme> + </Enzymes> + <ParentTolerance> + <cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance plus value"/> + <cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance minus value"/> + </ParentTolerance> + <Threshold> + <cvParam accession="MS:1001494" cvRef="PSI-MS" name="no threshold"/> + </Threshold> + </SpectrumIdentificationProtocol> +</AnalysisProtocolCollection> +<DataCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> + <Inputs> + <SearchDatabase numDatabaseSequences="100778" location="/mnt/galaxy/data/job_working_directory/000/567/dbase.fasta" id="SearchDB_1"> + <FileFormat> + <cvParam accession="MS:1001348" cvRef="PSI-MS" name="FASTA format"/> + </FileFormat> + <DatabaseName> + <userParam name="dbase.fasta"/> + </DatabaseName> + </SearchDatabase> + <SpectraData location="/tmp/tmpYrQpjc/dataset_651.dat.mzml" name="dataset_651.dat.mzml" id="SID_1"> + <FileFormat> + <cvParam accession="MS:1000584" cvRef="PSI-MS" name="mzML file"/> + </FileFormat> + <SpectrumIDFormat> + <cvParam accession="MS:1000768" cvRef="PSI-MS" name="Thermo nativeID format"/> + </SpectrumIDFormat> + </SpectraData> + </Inputs> + <AnalysisData> + <SpectrumIdentificationList id="SI_LIST_1"> + <FragmentationTable> + <Measure id="Measure_MZ"> + <cvParam accession="MS:1001225" cvRef="PSI-MS" unitCvRef="PSI-MS" unitName="m/z" unitAccession="MS:1000040" name="product ion m/z"/> + </Measure> + </FragmentationTable> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=114" id="SIR_14"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep1" calculatedMassToCharge="1563.3004150390625" experimentalMassToCharge="1563.2900390625" chargeState="3" id="SII_14_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_10385208_1_323"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_10386680_1_323"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_37935816_1_323"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_37937288_1_323"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-80" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="21" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="8.436431E-9" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="0.118822" name="MS-GF:EValue"/> + <userParam value="0" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="35460.188" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="114" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=119" id="SIR_19"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep2" calculatedMassToCharge="513.1725463867188" experimentalMassToCharge="513.1763305664062" chargeState="5" id="SII_19_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_34794920_2_16"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="36" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.3967498E-7" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.7166849" name="MS-GF:EValue"/> + <userParam value="0" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="48651.457" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <SpectrumIdentificationItem passThreshold="true" rank="2" peptide_ref="Pep3" calculatedMassToCharge="513.1725463867188" experimentalMassToCharge="513.1763305664062" chargeState="5" id="SII_19_2"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_9618115_3_318"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_9619115_3_298"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="36" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.3967498E-7" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="1.7166849" name="MS-GF:EValue"/> + <userParam value="0" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="48651.457" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="119" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=161" id="SIR_61"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep4" calculatedMassToCharge="1260.7398681640625" experimentalMassToCharge="1260.72998046875" chargeState="2" id="SII_61_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_17447106_4_393"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_17448268_4_407"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-45" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="1" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.720604E-7" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="7.2268076" name="MS-GF:EValue"/> + <userParam value="0" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="30739.516" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="161" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=108" id="SIR_8"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep5" calculatedMassToCharge="491.2787170410156" experimentalMassToCharge="491.2799987792969" chargeState="3" id="SII_8_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_15385580_5_644"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_15386942_5_644"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_15388304_5_644"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_15389889_5_644"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-14" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="2" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="6.6787294E-7" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="7.7167664" name="MS-GF:EValue"/> + <userParam value="0" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="63820.363" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="108" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=127" id="SIR_27"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep6" calculatedMassToCharge="1214.732177734375" experimentalMassToCharge="1214.72705078125" chargeState="2" id="SII_27_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_33076863_6_395"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_33078405_6_395"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_33079355_6_118"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-43" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="10" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="6.880694E-7" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9.058709" name="MS-GF:EValue"/> + <userParam value="0" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="23307.105" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="127" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=164" id="SIR_64"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep7" calculatedMassToCharge="948.8483276367188" experimentalMassToCharge="948.8460083007812" chargeState="3" id="SII_64_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_15937307_7_436"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_15937981_7_471"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-47" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="24" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.6529262E-6" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="21.9529" name="MS-GF:EValue"/> + <userParam value="0" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="31451.035" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="164" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=170" id="SIR_70"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep8" calculatedMassToCharge="1344.2288818359375" experimentalMassToCharge="1344.721923828125" chargeState="2" id="SII_70_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_14626938_8_42"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-58" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="0" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="2.5025913E-6" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="33.51599" name="MS-GF:EValue"/> + <userParam value="1" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="25516.688" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="170" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=156" id="SIR_56"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep9" calculatedMassToCharge="1304.66845703125" experimentalMassToCharge="1304.6722412109375" chargeState="2" id="SII_56_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_1786491_9_788"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-56" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="4" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="3.2470991E-6" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="43.125484" name="MS-GF:EValue"/> + <userParam value="0" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="23753.205" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="156" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=201" id="SIR_101"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep10" calculatedMassToCharge="1372.3759765625" experimentalMassToCharge="1372.7095947265625" chargeState="3" id="SII_101_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_18924499_10_765"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-91" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="25" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="9.082585E-6" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="133.41512" name="MS-GF:EValue"/> + <userParam value="1" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="30976.94" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="201" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=199" id="SIR_99"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep11" calculatedMassToCharge="1299.6488037109375" experimentalMassToCharge="1300.1600341796875" chargeState="2" id="SII_99_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_14136547_11_156"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_14137237_11_100"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-62" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="5" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="1.6317841E-5" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="214.83092" name="MS-GF:EValue"/> + <userParam value="1" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="31783.168" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="199" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=103" id="SIR_3"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep12" calculatedMassToCharge="1251.139892578125" experimentalMassToCharge="1251.6300048828125" chargeState="2" id="SII_3_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_25735948_12_3667"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-57" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="25" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="5.3448486E-5" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="703.6707" name="MS-GF:EValue"/> + <userParam value="1" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="28221.162" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="103" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=180" id="SIR_80"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep13" calculatedMassToCharge="1501.0423583984375" experimentalMassToCharge="1501.3699951171875" chargeState="3" id="SII_80_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_20420820_13_83"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_20421257_13_83"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-131" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="22" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="6.3713966E-4" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="9514.242" name="MS-GF:EValue"/> + <userParam value="1" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.039110184" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.039110184" name="CTermIonCurrentRatio"/> + <userParam value="35867.156" name="MS2IonCurrent"/> + <userParam value="1" name="NumMatchedMainIons"/> + <userParam value="1.7866856" name="MeanErrorAll"/> + <userParam value="0.0" name="StdevErrorAll"/> + <userParam value="1.7866856" name="MeanErrorTop7"/> + <userParam value="0.0" name="StdevErrorTop7"/> + <userParam value="1.7866856" name="MeanRelErrorAll"/> + <userParam value="0.0" name="StdevRelErrorAll"/> + <userParam value="1.7866856" name="MeanRelErrorTop7"/> + <userParam value="0.0" name="StdevRelErrorTop7"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="180" name="scan number(s)"/> + </SpectrumIdentificationResult> + <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=110" id="SIR_10"> + <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep14" calculatedMassToCharge="1367.5377197265625" experimentalMassToCharge="1368.0465087890625" chargeState="2" id="SII_10_1"> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_5474819_14_194"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_5475039_14_185"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_28350460_14_194"/> + <PeptideEvidenceRef peptideEvidence_ref="PepEv_28350680_14_185"/> + <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-110" name="MS-GF:RawScore"/> + <cvParam accession="MS:1002050" cvRef="PSI-MS" value="13" name="MS-GF:DeNovoScore"/> + <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.004133948" name="MS-GF:SpecEValue"/> + <cvParam accession="MS:1002053" cvRef="PSI-MS" value="56653.13" name="MS-GF:EValue"/> + <userParam value="1" name="IsotopeError"/> + <userParam value="HCD" name="AssumedDissociationMethod"/> + <userParam value="0.0" name="ExplainedIonCurrentRatio"/> + <userParam value="0.0" name="NTermIonCurrentRatio"/> + <userParam value="0.0" name="CTermIonCurrentRatio"/> + <userParam value="30227.537" name="MS2IonCurrent"/> + </SpectrumIdentificationItem> + <cvParam accession="MS:1001115" cvRef="PSI-MS" value="110" name="scan number(s)"/> + </SpectrumIdentificationResult> + </SpectrumIdentificationList> + </AnalysisData> +</DataCollection> +</MzIdentML>