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348 "tool_state": "{\"spliceSiteSize\": \"\\\"1\\\"\", \"filterHomHet\": \"\\\"no_filter\\\"\", \"outputFormat\": \"\\\"vcf\\\"\", \"udLength\": \"\\\"0\\\"\", \"inputFormat\": \"\\\"vcf\\\"\", \"filterIn\": \"\\\"-snp\\\"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"filterOut\": \"[\\\"-no-downstream\\\", \\\"-no-intergenic\\\", \\\"-no-intron\\\", \\\"-no-upstream\\\", \\\"-no-utr\\\"]\", \"generate_stats\": \"\\\"True\\\"\", \"noLog\": \"\\\"True\\\"\", \"chr\": \"\\\"\\\"\", \"intervals\": \"null\", \"snpDb\": \"{\\\"genome_version\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"genomeSrc\\\": \\\"named\\\", \\\"__current_case__\\\": 2}\", \"offset\": \"\\\"\\\"\", \"input\": \"null\", \"transcripts\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/GRCh37_canon.len\\\"\", \"annotations\": \"null\"}",
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349 "tool_version": "3.4",
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350 "type": "tool",
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351 "user_outputs": []
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352 },
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353 "11": {
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354 "annotation": "",
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355 "id": 11,
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356 "input_connections": {
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357 "all_pep_fasta": {
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358 "id": 3,
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359 "output_name": "output"
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360 },
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361 "snpeff_vcf": {
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362 "id": 10,
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363 "output_name": "snpeff_output"
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364 }
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365 },
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366 "inputs": [],
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367 "name": "SnpEff to Peptide fasta",
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368 "outputs": [
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369 {
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370 "name": "peptide_variant_fasta",
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371 "type": "fasta"
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372 }
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373 ],
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374 "position": {
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375 "left": 1885,
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376 "top": 455
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377 },
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378 "post_job_actions": {},
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379 "tool_errors": null,
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380 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/snpeff_to_peptides/snpeff_to_peptides/0.0.1",
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381 "tool_state": "{\"__page__\": 0, \"leading_aa_num\": \"\\\"66\\\"\", \"all_pep_fasta\": \"null\", \"__rerun_remap_job_id__\": null, \"trailing_aa_num\": \"\\\"66\\\"\", \"snpeff_vcf\": \"null\", \"chromInfo\": \"\\\"/website/galaxy.msi.umn.edu/PRODUCTION/tool-data/shared/ucsc/chrom/GRCh37_canon.len\\\"\"}",
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382 "tool_version": "0.0.1",
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383 "type": "tool",
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384 "user_outputs": []
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385 }
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386 }
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387 } |
