Mercurial > repos > ganjoo > webservice_toolsuite

comparison WebServiceToolWorkflow/WebServiceTool_input_method.xml @ 0:d5cd409b8a18 default tip

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author ganjoo
date Tue, 07 Jun 2011 18:00:50 -0400
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-1:000000000000 0:d5cd409b8a18
1 <tool id="WebServiceTool_input_method" name="Step 2: Verify Settings" version="1.0.0">
2 <description> This tool lets the user choose a method and a resource from the Web service description document. Many methods/operations could be grouped together in one description document. But each method/operation requires a unique tool to invoke it. So each method has to be registered with Galaxy individually.</description>
3 <command interpreter="python">
4 WebServiceTool_input_method.py
5 $url
6 $wadl
7 $webservice
8 $resourceUrl
9 $output
10 </command>
11 <inputs>
12 <param name = "url" type="data" label="a. The previous step was" help="For your information only. The previous step that was executed is displayed. No action required."/>
13 <param name ="wadl" type ="select" data_ref="url" label ="b. The tool chosen was" help="Displays the Web service tool chosen in Step 1. No action required.">
14 <options from_dataset="url">
15 <column name="name" index ="0"/>
16 <column name="value" index ="0"/>
17 <filter type="unique_value" name="unique" column="0"/>
18 </options>
19 </param>
20 <param name ="webservice" display = "radio" type ="select" data_ref="url" label ="c. Select the function of the tool you would like to use" help="Some tools have more than one function. It is important to select the appropriate function. One or more functions may be displayed here.">
21 <options from_dataset="url">
22 <column name="name" index ="1"/>
23 <column name="value" index ="1"/>
24 <filter type="unique_value" name="unique1" column="1"/>
25 </options>
26 </param>
27 <param name ="resourceUrl" display = "radio" type ="select" data_ref="url" label ="d. Further refine the tool function. Select an option based on the documentation or experience" help="Different tools have different options to refine the tool. This could be a choice of formats or resources you want to search. Make selection based on tool documentation or experience.">
28 <options from_dataset="url">
29 <column name="name" index ="2"/>
30 <column name="value" index ="2"/>
31 <filter type="param_value" ref="webservice" name="resourceUri" column="1"/>
32 <filter type="unique_value" name="unique2" column="2"/>
33 </options>
34 </param>
35 </inputs>
36 <outputs>
37 <data format="tabular" name="output" />
38 </outputs>
39
40 <help>
41
42
43 .. class:: infomark
44
45 **TIP:** a. For your information only. The previous step that was executed is displayed. No action required.
46
47 .. class:: infomark
48
49 **TIP:** b. Displays the Web service tool chosen in Step 1. No action required
50
51 .. class:: infomark
52
53 **TIP:** c. Some tools have more than one function. It is important to select the appropriate function.
54 One or more functions may be displayed here.
55
56 .. class:: infomark
57
58 **TIP:** d. Different tools have different options to refine the tool. This could be a choice of formats
59 or resources you want to search.
60 Make selection based on tool documentation or experience.
61
62
63 *NOTE: Step 1, Step 2 and Step 3 merely add this tool to Galaxy. To use the tool, after completing Step 3, go to the Tools section on left
64 and find the tool under Web Service Tools and Web Service Workflow Tools.*
65
66 </help>
67
68 </tool>
69