Mercurial > repos > gbcs-embl-heidelberg > je_clip

annotate je @ 3:2cfed59e4d27 draft

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planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
author gbcs-embl-heidelberg
date Wed, 21 Jun 2017 05:22:33 -0400
parents dfacabbde112
children 9d85f5915da9
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 #!/bin/sh
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2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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2 # Wrapper around je_1.1_bundle.jar
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4 # where are we stored ?
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5 DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
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6 # echo $DIR
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7 # path to jar file to execute, this jar is supposed to be in the same dir as this script
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2cfed59e4d27 planemo upload for repository https://git.embl.de/grp-gbcs/Je/tree/master/src/galaxy commit dd9e62bdb01d1252a90ce778103ce9b6b4a8cd52
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8 JAR_FILE=$DIR"/je_1.1_bundle.jar"
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9
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dfacabbde112 use _JAVA_OPTIONS to set default memory limit
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10 # set default _JAVA_OPTIONS
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11 _JAVA_OPTIONS=${_JAVA_OPTIONS:-'-Xmx4G -Xms256m'}
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12 export _JAVA_OPTIONS
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14 # uncomment to change logging level using your own log4j.xml found in $DIR file
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15 # OPTS="-Dlog4j.configuration=file:$DIR/log4j.xml"
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17 java $OPTS -jar $JAR_FILE "$@"
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18 exit $?